Literature DB >> 23030977

Taxonomies of networks from community structure.

Jukka-Pekka Onnela1,2,3,4, Daniel J Fenn5,4, Stephen Reid3, Mason A Porter6,4, Peter J Mucha7, Mark D Fricker8,4, Nick S Jones3,9,4.   

Abstract

The study of networks has become a substantial interdisciplinary endeavor that encompasses myriad disciplines in the natural, social, and information sciences. Here we introduce a framework for constructing taxonomies of networks based on their structural similarities. These networks can arise from any of numerous sources: They can be empirical or synthetic, they can arise from multiple realizations of a single process (either empirical or synthetic), they can represent entirely different systems in different disciplines, etc. Because mesoscopic properties of networks are hypothesized to be important for network function, we base our comparisons on summaries of network community structures. Although we use a specific method for uncovering network communities, much of the introduced framework is independent of that choice. After introducing the framework, we apply it to construct a taxonomy for 746 networks and demonstrate that our approach usefully identifies similar networks. We also construct taxonomies within individual categories of networks, and we thereby expose nontrivial structure. For example, we create taxonomies for similarity networks constructed from both political voting data and financial data. We also construct network taxonomies to compare the social structures of 100 Facebook networks and the growth structures produced by different types of fungi.

Entities:  

Mesh:

Year:  2012        PMID: 23030977      PMCID: PMC4144942          DOI: 10.1103/physreve.86.036104

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  24 in total

1.  Emergence of scaling in random networks

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2.  Specificity and stability in topology of protein networks.

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Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

3.  The connectional organization of the cortico-thalamic system of the cat.

Authors:  J W Scannell; G A Burns; C C Hilgetag; M A O'Neil; M P Young
Journal:  Cereb Cortex       Date:  1999 Apr-May       Impact factor: 5.357

4.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

5.  Community structure in time-dependent, multiscale, and multiplex networks.

Authors:  Peter J Mucha; Thomas Richardson; Kevin Macon; Mason A Porter; Jukka-Pekka Onnela
Journal:  Science       Date:  2010-05-14       Impact factor: 47.728

6.  Self-similarity of complex networks.

Authors:  Chaoming Song; Shlomo Havlin; Hernán A Makse
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

7.  Small-world connectivity, motif composition, and complexity of fractal neuronal connections.

Authors:  Olaf Sporns
Journal:  Biosystems       Date:  2006-03-06       Impact factor: 1.973

8.  Characterizing the community structure of complex networks.

Authors:  Andrea Lancichinetti; Mikko Kivelä; Jari Saramäki; Santo Fortunato
Journal:  PLoS One       Date:  2010-08-12       Impact factor: 3.240

9.  Katy Börner: Atlas of science: visualizing what we know: The MIT Press, Cambridge, MA/London, UK, 2010, US$20.

Authors:  Loet Leydesdorff
Journal:  Scientometrics       Date:  2011-05-13       Impact factor: 3.238

10.  BioGRID: a general repository for interaction datasets.

Authors:  Chris Stark; Bobby-Joe Breitkreutz; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  26 in total

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Authors:  Rudolf P Rohr; Russell E Naisbit; Christian Mazza; Louis-Félix Bersier
Journal:  Proc Biol Sci       Date:  2016-02-10       Impact factor: 5.349

2.  EndNote: Feature-based classification of networks.

Authors:  Ian Barnett; Nishant Malik; Marieke L Kuijjer; Peter J Mucha; Jukka-Pekka Onnela
Journal:  Netw Sci (Camb Univ Press)       Date:  2019-09-23

3.  Robust detection of dynamic community structure in networks.

Authors:  Danielle S Bassett; Mason A Porter; Nicholas F Wymbs; Scott T Grafton; Jean M Carlson; Peter J Mucha
Journal:  Chaos       Date:  2013-03       Impact factor: 3.642

4.  Functional brain networks: great expectations, hard times and the big leap forward.

Authors:  David Papo; Massimiliano Zanin; José Angel Pineda-Pardo; Stefano Boccaletti; Javier M Buldú
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-10-05       Impact factor: 6.237

5.  Enhanced Detectability of Community Structure in Multilayer Networks through Layer Aggregation.

Authors:  Dane Taylor; Saray Shai; Natalie Stanley; Peter J Mucha
Journal:  Phys Rev Lett       Date:  2016-06-02       Impact factor: 9.161

6.  NETWORK-ENSEMBLE COMPARISONS WITH STOCHASTIC REWIRING AND VON NEUMANN ENTROPY.

Authors:  Zichao Li; Peter J Mucha; Dane Taylor
Journal:  SIAM J Appl Math       Date:  2018-03-27       Impact factor: 2.080

7.  Clustering network layers with the strata multilayer stochastic block model.

Authors:  Natalie Stanley; Saray Shai; Dane Taylor; Peter J Mucha
Journal:  IEEE Trans Netw Sci Eng       Date:  2016-03-25

Review 8.  On the nature and use of models in network neuroscience.

Authors:  Danielle S Bassett; Perry Zurn; Joshua I Gold
Journal:  Nat Rev Neurosci       Date:  2018-09       Impact factor: 34.870

9.  Resolving structural variability in network models and the brain.

Authors:  Florian Klimm; Danielle S Bassett; Jean M Carlson; Peter J Mucha
Journal:  PLoS Comput Biol       Date:  2014-03-27       Impact factor: 4.475

10.  Community structure in the phonological network.

Authors:  Cynthia S Q Siew
Journal:  Front Psychol       Date:  2013-08-27
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