Literature DB >> 31984135

EndNote: Feature-based classification of networks.

Ian Barnett1, Nishant Malik2, Marieke L Kuijjer3, Peter J Mucha4, Jukka-Pekka Onnela5.   

Abstract

Network representations of systems from various scientific and societal domains are neither completely random nor fully regular, but instead appear to contain recurring structural features. These features tend to be shared by networks belonging to the same broad class, such as the class of social networks or the class of biological networks. Within each such class, networks describing similar systems tend to have similar features. This occurs presumably because networks representing similar systems would be expected to be generated by a shared set of domain specific mechanisms, and it should therefore be possible to classify networks based on their features at various structural levels. Here we describe and demonstrate a new hybrid approach that combines manual selection of network features of potential interest with existing automated classification methods. In particular, selecting well-known network features that have been studied extensively in social network analysis and network science literature, and then classifying networks on the basis of these features using methods such as random forest, which is known to handle the type of feature collinearity that arises in this setting, we find that our approach is able to achieve both higher accuracy and greater interpretability in shorter computation time than other methods.

Entities:  

Keywords:  network classification; random forest; social and biological networks

Year:  2019        PMID: 31984135      PMCID: PMC6980283          DOI: 10.1017/nws.2019.21

Source DB:  PubMed          Journal:  Netw Sci (Camb Univ Press)


  3 in total

1.  Graph kernels for chemical informatics.

Authors:  Liva Ralaivola; Sanjay J Swamidass; Hiroto Saigo; Pierre Baldi
Journal:  Neural Netw       Date:  2005-09-12

2.  Neocognitron: a self organizing neural network model for a mechanism of pattern recognition unaffected by shift in position.

Authors:  K Fukushima
Journal:  Biol Cybern       Date:  1980       Impact factor: 2.086

3.  Taxonomies of networks from community structure.

Authors:  Jukka-Pekka Onnela; Daniel J Fenn; Stephen Reid; Mason A Porter; Peter J Mucha; Mark D Fricker; Nick S Jones
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-10
  3 in total
  3 in total

1.  Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme.

Authors:  Camila M Lopes-Ramos; Tatiana Belova; Tess H Brunner; Marouen Ben Guebila; Daniel Osorio; John Quackenbush; Marieke L Kuijjer
Journal:  Cancer Res       Date:  2021-09-07       Impact factor: 12.701

2.  Scalable Approximate Bayesian Computation for Growing Network Models via Extrapolated and Sampled Summaries.

Authors:  Louis Raynal; Sixing Chen; Antonietta Mira; Jukka-Pekka Onnela
Journal:  Bayesian Anal       Date:  2020-12-08       Impact factor: 3.396

Review 3.  Dysphagia as a Postoperative Complication of Anterior Cervical Discectomy and Fusion.

Authors:  Georgios Tsalimas; Dimitrios Stergios Evangelopoulos; Ioannis S Benetos; Spiros Pneumaticos
Journal:  Cureus       Date:  2022-07-15
  3 in total

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