Literature DB >> 28435844

Clustering network layers with the strata multilayer stochastic block model.

Natalie Stanley1,2, Saray Shai2, Dane Taylor2, Peter J Mucha2.   

Abstract

Multilayer networks are a useful data structure for simultaneously capturing multiple types of relationships between a set of nodes. In such networks, each relational definition gives rise to a layer. While each layer provides its own set of information, community structure across layers can be collectively utilized to discover and quantify underlying relational patterns between nodes. To concisely extract information from a multilayer network, we propose to identify and combine sets of layers with meaningful similarities in community structure. In this paper, we describe the "strata multilayer stochastic block model" (sMLSBM), a probabilistic model for multilayer community structure. The central extension of the model is that there exist groups of layers, called "strata", which are defined such that all layers in a given stratum have community structure described by a common stochastic block model (SBM). That is, layers in a stratum exhibit similar node-to-community assignments and SBM probability parameters. Fitting the sMLSBM to a multilayer network provides a joint clustering that yields node-to-community and layer-to-stratum assignments, which cooperatively aid one another during inference. We describe an algorithm for separating layers into their appropriate strata and an inference technique for estimating the SBM parameters for each stratum. We demonstrate our method using synthetic networks and a multilayer network inferred from data collected in the Human Microbiome Project.

Entities:  

Keywords:  Clustering; Multilayer Networks; Probabilistic Models; Stochastic Block Models; Strata

Year:  2016        PMID: 28435844      PMCID: PMC5400296          DOI: 10.1109/TNSE.2016.2537545

Source DB:  PubMed          Journal:  IEEE Trans Netw Sci Eng        ISSN: 2327-4697


  18 in total

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4.  The human microbiome project.

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5.  Structural reducibility of multilayer networks.

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Journal:  Nat Commun       Date:  2015-04-23       Impact factor: 14.919

6.  Enhanced Detectability of Community Structure in Multilayer Networks through Layer Aggregation.

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Journal:  Phys Rev Lett       Date:  2016-06-02       Impact factor: 9.161

7.  Taxonomies of networks from community structure.

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8.  The genetic landscape of a cell.

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9.  Dynamics and associations of microbial community types across the human body.

Authors:  Tao Ding; Patrick D Schloss
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10.  Antagonistic interactions are sufficient to explain self-assemblage of bacterial communities in a homogeneous environment: a computational modeling approach.

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  8 in total

1.  Community Extraction in Multilayer Networks with Heterogeneous Community Structure.

Authors:  James D Wilson; John Palowitch; Shankar Bhamidi; Andrew B Nobel
Journal:  J Mach Learn Res       Date:  2017       Impact factor: 3.654

2.  The community structure of functional brain networks exhibits scale-specific patterns of inter- and intra-subject variability.

Authors:  Richard F Betzel; Maxwell A Bertolero; Evan M Gordon; Caterina Gratton; Nico U F Dosenbach; Danielle S Bassett
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3.  NETWORK-ENSEMBLE COMPARISONS WITH STOCHASTIC REWIRING AND VON NEUMANN ENTROPY.

Authors:  Zichao Li; Peter J Mucha; Dane Taylor
Journal:  SIAM J Appl Math       Date:  2018-03-27       Impact factor: 2.080

4.  Super-Resolution Community Detection for Layer-Aggregated Multilayer Networks.

Authors:  Dane Taylor; Rajmonda S Caceres; Peter J Mucha
Journal:  Phys Rev X       Date:  2017-09-26       Impact factor: 15.762

Review 5.  Resting-state functional MRI studies on infant brains: A decade of gap-filling efforts.

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Journal:  Neuroimage       Date:  2018-07-07       Impact factor: 6.556

6.  Testing for association in multiview network data.

Authors:  Lucy L Gao; Daniela Witten; Jacob Bien
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7.  Post-Processing Partitions to Identify Domains of Modularity Optimization.

Authors:  William H Weir; Scott Emmons; Ryan Gibson; Dane Taylor; Peter J Mucha
Journal:  Algorithms       Date:  2017-08-19

8.  Change points, memory and epidemic spreading in temporal networks.

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Journal:  Sci Rep       Date:  2018-10-19       Impact factor: 4.379

  8 in total

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