Literature DB >> 23027955

Efficient TALEN-mediated gene knockout in livestock.

Daniel F Carlson1, Wenfang Tan, Simon G Lillico, Dana Stverakova, Chris Proudfoot, Michelle Christian, Daniel F Voytas, Charles R Long, C Bruce A Whitelaw, Scott C Fahrenkrug.   

Abstract

Transcription activator-like effector nucleases (TALENs) are programmable nucleases that join FokI endonuclease with the modular DNA-binding domain of TALEs. Although zinc-finger nucleases enable a variety of genome modifications, their application to genetic engineering of livestock has been slowed by technical limitations of embryo-injection, culture of primary cells, and difficulty in producing reliable reagents with a limited budget. In contrast, we found that TALENs could easily be manufactured and that over half (23/36, 64%) demonstrate high activity in primary cells. Cytoplasmic injections of TALEN mRNAs into livestock zygotes were capable of inducing gene KO in up to 75% of embryos analyzed, a portion of which harbored biallelic modification. We also developed a simple transposon coselection strategy for TALEN-mediated gene modification in primary fibroblasts that enabled both enrichment for modified cells and efficient isolation of modified colonies. Coselection after treatment with a single TALEN-pair enabled isolation of colonies with mono- and biallelic modification in up to 54% and 17% of colonies, respectively. Coselection after treatment with two TALEN-pairs directed against the same chromosome enabled the isolation of colonies harboring large chromosomal deletions and inversions (10% and 4% of colonies, respectively). TALEN-modified Ossabaw swine fetal fibroblasts were effective nuclear donors for cloning, resulting in the creation of miniature swine containing mono- and biallelic mutations of the LDL receptor gene as models of familial hypercholesterolemia. TALENs thus appear to represent a highly facile platform for the modification of livestock genomes for both biomedical and agricultural applications.

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Year:  2012        PMID: 23027955      PMCID: PMC3491456          DOI: 10.1073/pnas.1211446109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Surrogate reporters for enrichment of cells with nuclease-induced mutations.

Authors:  Hyojin Kim; Eunji Um; Sung-Rae Cho; Chorong Jung; Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2011-10-09       Impact factor: 28.547

Review 2.  Structural variation in the human genome.

Authors:  Lars Feuk; Andrew R Carson; Stephen W Scherer
Journal:  Nat Rev Genet       Date:  2006-02       Impact factor: 53.242

Review 3.  Function and genetics of dystrophin and dystrophin-related proteins in muscle.

Authors:  Derek J Blake; Andrew Weir; Sarah E Newey; Kay E Davies
Journal:  Physiol Rev       Date:  2002-04       Impact factor: 37.312

4.  Efficient mammalian germline transgenesis by cis-enhanced Sleeping Beauty transposition.

Authors:  Daniel F Carlson; Aron M Geurts; John R Garbe; Chang-Won Park; Artur Rangel-Filho; Scott M O'Grady; Howard J Jacob; Clifford J Steer; David A Largaespada; Scott C Fahrenkrug
Journal:  Transgenic Res       Date:  2010-03-30       Impact factor: 2.788

5.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

6.  Deletion in the first cysteine-rich repeat of low density lipoprotein receptor impairs its transport but not lipoprotein binding in fibroblasts from a subject with familial hypercholesterolemia.

Authors:  E Leitersdorf; H H Hobbs; A M Fourie; M Jacobs; D R van der Westhuyzen; G A Coetzee
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

7.  Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Authors:  Hye Joo Kim; Hyung Joo Lee; Hyojin Kim; Seung Woo Cho; Jin-Soo Kim
Journal:  Genome Res       Date:  2009-05-21       Impact factor: 9.043

8.  FLASH assembly of TALENs for high-throughput genome editing.

Authors:  Deepak Reyon; Shengdar Q Tsai; Cyd Khayter; Jennifer A Foden; Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

9.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

10.  A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

Authors:  Claudio Mussolino; Robert Morbitzer; Fabienne Lütge; Nadine Dannemann; Thomas Lahaye; Toni Cathomen
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

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  248 in total

Review 1.  Genetically engineered livestock for agriculture: a generation after the first transgenic animal research conference.

Authors:  James D Murray; Elizabeth A Maga
Journal:  Transgenic Res       Date:  2016-01-28       Impact factor: 2.788

Review 2.  The transgenic animal platform for biopharmaceutical production.

Authors:  L R Bertolini; H Meade; C R Lazzarotto; L T Martins; K C Tavares; M Bertolini; J D Murray
Journal:  Transgenic Res       Date:  2016-01-28       Impact factor: 2.788

3.  Germline modification of domestic animals.

Authors:  L Tang; R González; I Dobrinski
Journal:  Anim Reprod       Date:  2015 Jan-Mar       Impact factor: 1.807

Review 4.  Genome editing revolutionize the creation of genetically modified pigs for modeling human diseases.

Authors:  Jing Yao; Jiaojiao Huang; Jianguo Zhao
Journal:  Hum Genet       Date:  2016-07-18       Impact factor: 4.132

5.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

6.  Reduced human platelet uptake by pig livers deficient in the asialoglycoprotein receptor 1 protein.

Authors:  Leela L Paris; Jose L Estrada; Ping Li; Ross L Blankenship; Richard A Sidner; Luz M Reyes; Jessica B Montgomery; Christopher Burlak; James R Butler; Susan M Downey; Zheng-Yu Wang; Matthew Tector; A Joseph Tector
Journal:  Xenotransplantation       Date:  2015-02-27       Impact factor: 3.907

7.  TALEN-mediated gene targeting in porcine spermatogonia.

Authors:  Lin Tang; Alla Bondareva; Raquel González; Jose R Rodriguez-Sosa; Daniel F Carlson; Dennis Webster; Scott Fahrenkrug; Ina Dobrinski
Journal:  Mol Reprod Dev       Date:  2018-02-22       Impact factor: 2.609

8.  Targeted genome editing in Aedes aegypti using TALENs.

Authors:  Azadeh Aryan; Kevin M Myles; Zach N Adelman
Journal:  Methods       Date:  2014-02-18       Impact factor: 3.608

9.  Vimentin Intermediate Filaments Template Microtubule Networks to Enhance Persistence in Cell Polarity and Directed Migration.

Authors:  Zhuo Gan; Liya Ding; Christoph J Burckhardt; Jason Lowery; Assaf Zaritsky; Karlyndsay Sitterley; Andressa Mota; Nancy Costigliola; Colby G Starker; Daniel F Voytas; Jessica Tytell; Robert D Goldman; Gaudenz Danuser
Journal:  Cell Syst       Date:  2016-09-22       Impact factor: 10.304

10.  Viral transduction of male germline stem cells results in transgene transmission after germ cell transplantation in pigs.

Authors:  Wenxian Zeng; Lin Tang; Alla Bondareva; Ali Honaramooz; Valeria Tanco; Camila Dores; Susan Megee; Mark Modelski; Jose Rafael Rodriguez-Sosa; Melissa Paczkowski; Elena Silva; Matt Wheeler; Rebecca L Krisher; Ina Dobrinski
Journal:  Biol Reprod       Date:  2013-01-31       Impact factor: 4.285

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