Literature DB >> 23023124

Clonal allelic predetermination of immunoglobulin-κ rearrangement.

Marganit Farago1, Chaggai Rosenbluh, Maya Tevlin, Shira Fraenkel, Sharon Schlesinger, Hagit Masika, Masha Gouzman, Grace Teng, David Schatz, Yoach Rais, Jacob H Hanna, Alexander Mildner, Steffen Jung, Gustavo Mostoslavsky, Howard Cedar, Yehudit Bergman.   

Abstract

Although most genes are expressed biallelically, a number of key genomic sites--including immune and olfactory receptor regions--are controlled monoallelically in a stochastic manner, with some cells expressing the maternal allele and others the paternal allele in the target tissue. Very little is known about how this phenomenon is regulated and programmed during development. Here, using mouse immunoglobulin-κ (Igκ) as a model system, we demonstrate that although individual haematopoietic stem cells are characterized by allelic plasticity, early lymphoid lineage cells become committed to the choice of a single allele, and this decision is then stably maintained in a clonal manner that predetermines monoallelic rearrangement in B cells. This is accompanied at the molecular level by underlying allelic changes in asynchronous replication timing patterns at the κ locus. These experiments may serve to define a new concept of stem cell plasticity.

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Year:  2012        PMID: 23023124     DOI: 10.1038/nature11496

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  36 in total

1.  Contribution of receptor editing to the antibody repertoire.

Authors:  R Casellas; T A Shih; M Kleinewietfeld; J Rakonjac; D Nemazee; K Rajewsky; M C Nussenzweig
Journal:  Science       Date:  2001-02-23       Impact factor: 47.728

Review 2.  Pax5: a master regulator of B cell development and leukemogenesis.

Authors:  Jasna Medvedovic; Anja Ebert; Hiromi Tagoh; Meinrad Busslinger
Journal:  Adv Immunol       Date:  2011       Impact factor: 3.543

3.  Asynchronous replication of imprinted genes is established in the gametes and maintained during development.

Authors:  I Simon; T Tenzen; B E Reubinoff; D Hillman; J R McCarrey; H Cedar
Journal:  Nature       Date:  1999-10-28       Impact factor: 49.962

4.  Early TCR expression and aberrant T cell development in mice with endogenous prerearranged T cell receptor genes.

Authors:  Thomas Serwold; Konrad Hochedlinger; Matthew A Inlay; Rudolf Jaenisch; Irving L Weissman
Journal:  J Immunol       Date:  2007-07-15       Impact factor: 5.422

5.  DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin.

Authors:  Alon Goren; Amalia Tabib; Merav Hecht; Howard Cedar
Journal:  Genes Dev       Date:  2008-04-28       Impact factor: 11.361

6.  Allelic inactivation of rDNA loci.

Authors:  Sharon Schlesinger; Sara Selig; Yehudit Bergman; Howard Cedar
Journal:  Genes Dev       Date:  2009-10-15       Impact factor: 11.361

Review 7.  Green fluorescent protein (GFP) as a vital marker in mammals.

Authors:  M Ikawa; S Yamada; T Nakanishi; M Okabe
Journal:  Curr Top Dev Biol       Date:  1999       Impact factor: 4.897

Review 8.  From hematopoietic progenitors to B cells: mechanisms of lineage restriction and commitment.

Authors:  Julita Ramírez; Kara Lukin; James Hagman
Journal:  Curr Opin Immunol       Date:  2010-03-06       Impact factor: 7.486

9.  X chromosome choice occurs independently of asynchronous replication timing.

Authors:  Joost Gribnau; Sandra Luikenhuis; Konrad Hochedlinger; Kim Monkhorst; Rudolf Jaenisch
Journal:  J Cell Biol       Date:  2005-01-24       Impact factor: 10.539

10.  Differences between homologous alleles of olfactory receptor genes require the Polycomb Group protein Eed.

Authors:  Mary Kate Alexander; Susanna Mlynarczyk-Evans; Morgan Royce-Tolland; Alex Plocik; Sundeep Kalantry; Terry Magnuson; Barbara Panning
Journal:  J Cell Biol       Date:  2007-10-22       Impact factor: 10.539

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  22 in total

Review 1.  Epigenetic aspects of lymphocyte antigen receptor gene rearrangement or 'when stochasticity completes randomness'.

Authors:  Sébastien Jaeger; Bastien Fernandez; Pierre Ferrier
Journal:  Immunology       Date:  2013-06       Impact factor: 7.397

Review 2.  Long-Range Regulation of V(D)J Recombination.

Authors:  Charlotte Proudhon; Bingtao Hao; Ramya Raviram; Julie Chaumeil; Jane A Skok
Journal:  Adv Immunol       Date:  2015-08-20       Impact factor: 3.543

3.  Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells.

Authors:  Jin Xu; Ava C Carter; Anne-Valerie Gendrel; Mikael Attia; Joshua Loftus; William J Greenleaf; Robert Tibshirani; Edith Heard; Howard Y Chang
Journal:  Nat Genet       Date:  2017-01-23       Impact factor: 38.330

4.  Nemo-Dependent, ATM-Mediated Signals from RAG DNA Breaks at Igk Feedback Inhibit V κ Recombination to Enforce Igκ Allelic Exclusion.

Authors:  Rebecca A Glynn; Craig H Bassing
Journal:  J Immunol       Date:  2021-12-29       Impact factor: 5.422

5.  A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment.

Authors:  Kenneth Kh Ng; Mary A Yui; Arnav Mehta; Sharmayne Siu; Blythe Irwin; Shirley Pease; Satoshi Hirose; Michael B Elowitz; Ellen V Rothenberg; Hao Yuan Kueh
Journal:  Elife       Date:  2018-11-20       Impact factor: 8.140

Review 6.  Stochastic gene expression in mammals: lessons from olfaction.

Authors:  Angeliki Magklara; Stavros Lomvardas
Journal:  Trends Cell Biol       Date:  2013-05-18       Impact factor: 20.808

7.  Rare event of histone demethylation can initiate singular gene expression of olfactory receptors.

Authors:  Longzhi Tan; Chenghang Zong; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-24       Impact factor: 11.205

Review 8.  Replication timing and transcriptional control: beyond cause and effect-part III.

Authors:  Juan Carlos Rivera-Mulia; David M Gilbert
Journal:  Curr Opin Cell Biol       Date:  2016-04-23       Impact factor: 8.382

9.  Higher-order looping and nuclear organization of Tcra facilitate targeted rag cleavage and regulated rearrangement in recombination centers.

Authors:  Julie Chaumeil; Mariann Micsinai; Panagiotis Ntziachristos; Ludovic Deriano; Joy M-H Wang; Yanhong Ji; Elphege P Nora; Matthew J Rodesch; Jeffrey A Jeddeloh; Iannis Aifantis; Yuval Kluger; David G Schatz; Jane A Skok
Journal:  Cell Rep       Date:  2013-02-14       Impact factor: 9.423

10.  Chromatin signature of widespread monoallelic expression.

Authors:  Anwesha Nag; Virginia Savova; Ho-Lim Fung; Alexander Miron; Guo-Cheng Yuan; Kun Zhang; Alexander A Gimelbrant
Journal:  Elife       Date:  2013-12-31       Impact factor: 8.140

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