Literature DB >> 23689023

Stochastic gene expression in mammals: lessons from olfaction.

Angeliki Magklara1, Stavros Lomvardas.   

Abstract

One of the remarkable characteristics of higher organisms is the enormous assortment of cell types that emerge from a common genome. The immune system, with the daunting duty of detecting an astounding number of pathogens, and the nervous system with the equally bewildering task of perceiving and interpreting the external world, are the quintessence of cellular diversity. As we began to appreciate decades ago, achieving distinct expression programs among similar cell types cannot be accomplished solely by deterministic regulatory systems, but by the involvement of some type of stochasticity. In the last few years our understanding of these non-deterministic mechanisms is advancing, and this review will provide a brief summary of the current view of stochastic gene expression with focus on olfactory receptor (OR) gene choice, the epigenetic underpinnings of which recently began to emerge.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  antigen receptors; clustered protocadherins; epigenetic mechanisms; nuclear architecture; olfactory receptors; stochasticity

Mesh:

Substances:

Year:  2013        PMID: 23689023      PMCID: PMC3755038          DOI: 10.1016/j.tcb.2013.04.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  49 in total

1.  Asynchronous replication and allelic exclusion in the immune system.

Authors:  R Mostoslavsky; N Singh; T Tenzen; M Goldmit; C Gabay; S Elizur; P Qi; B E Reubinoff; A Chess; H Cedar; Y Bergman
Journal:  Nature       Date:  2001-11-08       Impact factor: 49.962

2.  Prominent roles for odorant receptor coding sequences in allelic exclusion.

Authors:  Minh Q Nguyen; Zhishang Zhou; Carolyn A Marks; Nicholas J P Ryba; Leonardo Belluscio
Journal:  Cell       Date:  2007-11-30       Impact factor: 41.582

Review 3.  Protocadherin family: diversity, structure, and function.

Authors:  Hirofumi Morishita; Takeshi Yagi
Journal:  Curr Opin Cell Biol       Date:  2007-10-23       Impact factor: 8.382

4.  Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-alpha gene cluster.

Authors:  Masahumi Kawaguchi; Tomoko Toyama; Ryosuke Kaneko; Teruyoshi Hirayama; Yoshimi Kawamura; Takeshi Yagi
Journal:  J Biol Chem       Date:  2008-01-18       Impact factor: 5.157

5.  Initiation of allelic exclusion by stochastic interaction of Tcrb alleles with repressive nuclear compartments.

Authors:  Ryan J Schlimgen; Karen L Reddy; Harinder Singh; Michael S Krangel
Journal:  Nat Immunol       Date:  2008-06-08       Impact factor: 25.606

Review 6.  Choreography of Ig allelic exclusion.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Curr Opin Immunol       Date:  2008-04-09       Impact factor: 7.486

Review 7.  Stochastic neuronal cell fate choices.

Authors:  Robert J Johnston; Claude Desplan
Journal:  Curr Opin Neurobiol       Date:  2008-05-27       Impact factor: 6.627

8.  Interchromosomal interactions and olfactory receptor choice.

Authors:  Stavros Lomvardas; Gilad Barnea; David J Pisapia; Monica Mendelsohn; Jennifer Kirkland; Richard Axel
Journal:  Cell       Date:  2006-07-28       Impact factor: 41.582

9.  Identification of long-range regulatory elements in the protocadherin-alpha gene cluster.

Authors:  Scott Ribich; Bosiljka Tasic; Tom Maniatis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

10.  Mice cloned from olfactory sensory neurons.

Authors:  Kevin Eggan; Kristin Baldwin; Michael Tackett; Joseph Osborne; Joseph Gogos; Andrew Chess; Richard Axel; Rudolf Jaenisch
Journal:  Nature       Date:  2004-02-15       Impact factor: 49.962

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  34 in total

1.  Extinction reverses olfactory fear-conditioned increases in neuron number and glomerular size.

Authors:  Filomene G Morrison; Brian G Dias; Kerry J Ressler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-29       Impact factor: 11.205

Review 2.  The developmental genetics of biological robustness.

Authors:  Lamia Mestek Boukhibar; Michalis Barkoulas
Journal:  Ann Bot       Date:  2015-08-20       Impact factor: 4.357

3.  Co-opting the unfolded protein response to elicit olfactory receptor feedback.

Authors:  Ryan P Dalton; David B Lyons; Stavros Lomvardas
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 4.  Mono-allelic VSG expression by RNA polymerase I in Trypanosoma brucei: expression site control from both ends?

Authors:  Arthur Günzl; Justin K Kirkham; Tu N Nguyen; Nitika Badjatia; Sung Hee Park
Journal:  Gene       Date:  2014-09-26       Impact factor: 3.688

5.  Achieving diverse and monoallelic olfactory receptor selection through dual-objective optimization design.

Authors:  Xiao-Jun Tian; Hang Zhang; Jens Sannerud; Jianhua Xing
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

6.  Sensory Biology: Novel Peripheral Organization for Better Smell.

Authors:  Crystal M Wall; Haiqing Zhao
Journal:  Curr Biol       Date:  2015-10-05       Impact factor: 10.834

Review 7.  Evolution, developmental expression and function of odorant receptors in insects.

Authors:  Hua Yan; Shadi Jafari; Gregory Pask; Xiaofan Zhou; Danny Reinberg; Claude Desplan
Journal:  J Exp Biol       Date:  2020-02-07       Impact factor: 3.312

Review 8.  The establishment of B versus T cell identity.

Authors:  Kazuko Miyazaki; Masaki Miyazaki; Cornelis Murre
Journal:  Trends Immunol       Date:  2014-03-26       Impact factor: 16.687

Review 9.  Random monoallelic expression: regulating gene expression one allele at a time.

Authors:  Mélanie A Eckersley-Maslin; David L Spector
Journal:  Trends Genet       Date:  2014-04-26       Impact factor: 11.639

10.  Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.

Authors:  Sandhya R Pulivarthy; Mattia Lion; Guray Kuzu; Adam G W Matthews; Mark L Borowsky; John Morris; Robert E Kingston; Jonathan H Dennis; Michael Y Tolstorukov; Marjorie A Oettinger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-03       Impact factor: 11.205

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