Literature DB >> 23020318

Affine-response model of molecular solvation of ions: Accurate predictions of asymmetric charging free energies.

Jaydeep P Bardhan1, Pavel Jungwirth, Lee Makowski.   

Abstract

Two mechanisms have been proposed to drive asymmetric solvent response to a solute charge: a static potential contribution similar to the liquid-vapor potential, and a steric contribution associated with a water molecule's structure and charge distribution. In this work, we use free-energy perturbation molecular-dynamics calculations in explicit water to show that these mechanisms act in complementary regimes; the large static potential (∼44 kJ/mol/e) dominates asymmetric response for deeply buried charges, and the steric contribution dominates for charges near the solute-solvent interface. Therefore, both mechanisms must be included in order to fully account for asymmetric solvation in general. Our calculations suggest that the steric contribution leads to a remarkable deviation from the popular "linear response" model in which the reaction potential changes linearly as a function of charge. In fact, the potential varies in a piecewise-linear fashion, i.e., with different proportionality constants depending on the sign of the charge. This discrepancy is significant even when the charge is completely buried, and holds for solutes larger than single atoms. Together, these mechanisms suggest that implicit-solvent models can be improved using a combination of affine response (an offset due to the static potential) and piecewise-linear response (due to the steric contribution).

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23020318      PMCID: PMC3470608          DOI: 10.1063/1.4752735

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  20 in total

1.  Electrical properties of free surface of water and aqueous solutions.

Authors:  M Paluch
Journal:  Adv Colloid Interface Sci       Date:  2000-01-01       Impact factor: 12.984

Review 2.  What are the dielectric "constants" of proteins and how to validate electrostatic models?

Authors:  C N Schutz; A Warshel
Journal:  Proteins       Date:  2001-09-01

3.  Size dependent ion hydration, its asymmetry, and convergence to macroscopic behavior.

Authors:  Sowmianarayanan Rajamani; Tuhin Ghosh; Shekhar Garde
Journal:  J Chem Phys       Date:  2004-03-01       Impact factor: 3.488

4.  Rapid Prediction of Solvation Free Energy. 2. The First-Shell Hydration (FiSH) Continuum Model.

Authors:  Christopher R Corbeil; Traian Sulea; Enrico O Purisima
Journal:  J Chem Theory Comput       Date:  2010-04-02       Impact factor: 6.006

5.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

6.  Quantum mechanical continuum solvation models.

Authors:  Jacopo Tomasi; Benedetta Mennucci; Roberto Cammi
Journal:  Chem Rev       Date:  2005-08       Impact factor: 60.622

7.  Charge asymmetries in hydration of polar solutes.

Authors:  David L Mobley; Janene R Baker; Alan E Barber; Christopher J Fennell; Ken A Dill
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

8.  Langevin-Debye model for nonlinear electrostatic screening of solvated ions.

Authors:  Haipeng Gong; Karl F Freed
Journal:  Phys Rev Lett       Date:  2009-02-06       Impact factor: 9.161

9.  Understanding the surface potential of water.

Authors:  Shawn M Kathmann; I-Feng William Kuo; Christopher J Mundy; Gregory K Schenter
Journal:  J Phys Chem B       Date:  2011-03-30       Impact factor: 2.991

10.  The AGBNP2 Implicit Solvation Model.

Authors:  Emilio Gallicchio; Kristina Paris; Ronald M Levy
Journal:  J Chem Theory Comput       Date:  2009-07-31       Impact factor: 6.006

View more
  8 in total

1.  Nonlocal Electrostatics in Spherical Geometries Using Eigenfunction Expansions of Boundary-Integral Operators.

Authors:  Jaydeep P Bardhan; Matthew G Knepley; Peter Brune
Journal:  Mol Based Math Biol       Date:  2015-01

2.  Communication: modeling charge-sign asymmetric solvation free energies with nonlinear boundary conditions.

Authors:  Jaydeep P Bardhan; Matthew G Knepley
Journal:  J Chem Phys       Date:  2014-10-07       Impact factor: 3.488

3.  Accuracy limit of rigid 3-point water models.

Authors:  Saeed Izadi; Alexey V Onufriev
Journal:  J Chem Phys       Date:  2016-08-21       Impact factor: 3.488

4.  Electrostatic solvation and mobility in uniform and non-uniform electric fields: From simple ions to proteins.

Authors:  Dmitry V Matyushov
Journal:  Biomicrofluidics       Date:  2019-11-07       Impact factor: 2.800

5.  Gradient Models in Molecular Biophysics: Progress, Challenges, Opportunities.

Authors:  Jaydeep P Bardhan
Journal:  J Mech Behav Mater       Date:  2013-12

6.  Assessing long-range contributions to the charge asymmetry of ion adsorption at the air-water interface.

Authors:  Stephen J Cox; Dayton G Thorpe; Patrick R Shaffer; Phillip L Geissler
Journal:  Chem Sci       Date:  2020-10-05       Impact factor: 9.825

7.  Introducing Charge Hydration Asymmetry into the Generalized Born Model.

Authors:  Abhishek Mukhopadhyay; Boris H Aguilar; Igor S Tolokh; Alexey V Onufriev
Journal:  J Chem Theory Comput       Date:  2014-02-18       Impact factor: 6.006

8.  Real single ion solvation free energies with quantum mechanical simulation.

Authors:  Timothy T Duignan; Marcel D Baer; Gregory K Schenter; Christopher J Mundy
Journal:  Chem Sci       Date:  2017-07-04       Impact factor: 9.825

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.