Literature DB >> 23019344

Overcoming transcription activator-like effector (TALE) DNA binding domain sensitivity to cytosine methylation.

Julien Valton1, Aurélie Dupuy, Fayza Daboussi, Séverine Thomas, Alan Maréchal, Rachel Macmaster, Kevin Melliand, Alexandre Juillerat, Philippe Duchateau.   

Abstract

Within the past 2 years, transcription activator-like effector (TALE) DNA binding domains have emerged as the new generation of engineerable platform for production of custom DNA binding domains. However, their recently described sensitivity to cytosine methylation represents a major bottleneck for genome engineering applications. Using a combination of biochemical, structural, and cellular approaches, we were able to identify the molecular basis of such sensitivity and propose a simple, drug-free, and universal method to overcome it.

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Year:  2012        PMID: 23019344      PMCID: PMC3493886          DOI: 10.1074/jbc.C112.408864

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

2.  Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors.

Authors:  Robert Morbitzer; Patrick Römer; Jens Boch; Thomas Lahaye
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-24       Impact factor: 11.205

Review 3.  Aberrant epigenetic landscape in cancer: how cellular identity goes awry.

Authors:  María Berdasco; Manel Esteller
Journal:  Dev Cell       Date:  2010-11-16       Impact factor: 12.270

Review 4.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

5.  Cancer-related epigenome changes associated with reprogramming to induced pluripotent stem cells.

Authors:  Joyce E Ohm; Prashant Mali; Leander Van Neste; David M Berman; Liang Liang; Kurinji Pandiyan; Kimberly J Briggs; Wei Zhang; Pedram Argani; Brian Simons; Wayne Yu; William Matsui; Wim Van Criekinge; Feyruz V Rassool; Elias Zambidis; Kornel E Schuebel; Leslie Cope; Jonathan Yen; Helai P Mohammad; Linzhao Cheng; Stephen B Baylin
Journal:  Cancer Res       Date:  2010-09-14       Impact factor: 12.701

6.  The crystal structure of TAL effector PthXo1 bound to its DNA target.

Authors:  Amanda Nga-Sze Mak; Philip Bradley; Raul A Cernadas; Adam J Bogdanove; Barry L Stoddard
Journal:  Science       Date:  2012-01-05       Impact factor: 47.728

Review 7.  DNA methylation in higher plants: past, present and future.

Authors:  Boris F Vanyushin; Vasili V Ashapkin
Journal:  Biochim Biophys Acta       Date:  2011-04-28

8.  DNA methylation of the first exon is tightly linked to transcriptional silencing.

Authors:  Fabienne Brenet; Michelle Moh; Patricia Funk; Erika Feierstein; Agnes J Viale; Nicholas D Socci; Joseph M Scandura
Journal:  PLoS One       Date:  2011-01-18       Impact factor: 3.240

9.  A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

Authors:  Claudio Mussolino; Robert Morbitzer; Fabienne Lütge; Nadine Dannemann; Thomas Lahaye; Toni Cathomen
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

10.  Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.

Authors:  Michael J Ziller; Fabian Müller; Jing Liao; Yingying Zhang; Hongcang Gu; Christoph Bock; Patrick Boyle; Charles B Epstein; Bradley E Bernstein; Thomas Lengauer; Andreas Gnirke; Alexander Meissner
Journal:  PLoS Genet       Date:  2011-12-08       Impact factor: 5.917

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  78 in total

Review 1.  The New State of the Art: Cas9 for Gene Activation and Repression.

Authors:  Marie F La Russa; Lei S Qi
Journal:  Mol Cell Biol       Date:  2015-09-14       Impact factor: 4.272

Review 2.  Salient Features of Endonuclease Platforms for Therapeutic Genome Editing.

Authors:  Michael T Certo; Richard A Morgan
Journal:  Mol Ther       Date:  2016-01-22       Impact factor: 11.454

3.  Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing.

Authors:  Ayal Hendel; Eric J Kildebeck; Eli J Fine; Joseph Clark; Niraj Punjya; Vittorio Sebastiano; Gang Bao; Matthew H Porteus
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

Review 4.  Genome editing: a robust technology for human stem cells.

Authors:  Arun Pandian Chandrasekaran; Minjung Song; Suresh Ramakrishna
Journal:  Cell Mol Life Sci       Date:  2017-04-12       Impact factor: 9.261

Review 5.  Progress and prospects of engineered sequence-specific DNA modulating technologies for the management of liver diseases.

Authors:  Samantha A Nicholson; Buhle Moyo; Patrick B Arbuthnot
Journal:  World J Hepatol       Date:  2015-04-28

6.  A library of TAL effector nucleases spanning the human genome.

Authors:  Yongsub Kim; Jiyeon Kweon; Annie Kim; Jae Kyung Chon; Ji Yeon Yoo; Hye Joo Kim; Sojung Kim; Choongil Lee; Euihwan Jeong; Eugene Chung; Doyoung Kim; Mi Seon Lee; Eun Mi Go; Hye Jung Song; Hwangbeom Kim; Namjin Cho; Duhee Bang; Seokjoong Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-02-17       Impact factor: 54.908

7.  Precision genetic modifications: a new era in molecular biology and crop improvement.

Authors:  Franziska Fichtner; Reynel Urrea Castellanos; Bekir Ülker
Journal:  Planta       Date:  2014-02-08       Impact factor: 4.116

Review 8.  A guide to genome engineering with programmable nucleases.

Authors:  Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Rev Genet       Date:  2014-04-02       Impact factor: 53.242

Review 9.  New frontier in regenerative medicine: site-specific gene correction in patient-specific induced pluripotent stem cells.

Authors:  Zita Garate; Brian R Davis; Oscar Quintana-Bustamante; Jose C Segovia
Journal:  Hum Gene Ther       Date:  2013-06       Impact factor: 5.695

Review 10.  A cut above the rest: targeted genome editing technologies in human pluripotent stem cells.

Authors:  Mo Li; Keiichiro Suzuki; Na Young Kim; Guang-Hui Liu; Juan Carlos Izpisua Belmonte
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

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