Literature DB >> 24510124

Precision genetic modifications: a new era in molecular biology and crop improvement.

Franziska Fichtner1, Reynel Urrea Castellanos, Bekir Ülker.   

Abstract

Recently, the use of programmable DNA-binding proteins such as ZFP/ZFNs, TALE/TALENs and CRISPR/Cas has produced unprecedented advances in gene targeting and genome editing in prokaryotes and eukaryotes. These advances allow researchers to specifically alter genes, reprogram epigenetic marks, generate site-specific deletions and potentially cure diseases. Unlike previous methods, these precision genetic modification techniques (PGMs) are specific, efficient, easy to use and economical. Here we discuss the capabilities and pitfalls of PGMs and highlight the recent, exciting applications of PGMs in molecular biology and crop genetic engineering. Further improvement of the efficiency and precision of PGM techniques will enable researchers to precisely alter gene expression and biological/chemical pathways, probe gene function, modify epigenetic marks and improve crops by increasing yield, quality and tolerance to limiting biotic and abiotic stress conditions.

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Year:  2014        PMID: 24510124     DOI: 10.1007/s00425-014-2029-y

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  161 in total

1.  Methylation of mitochondrial DNA is not a useful marker for cancer detection.

Authors:  Masato Maekawa; Terumi Taniguchi; Hitomi Higashi; Haruhiko Sugimura; Kokichi Sugano; Takashi Kanno
Journal:  Clin Chem       Date:  2004-08       Impact factor: 8.327

2.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

3.  Policy: Sustainable development goals for people and planet.

Authors:  David Griggs; Mark Stafford-Smith; Owen Gaffney; Johan Rockström; Marcus C Ohman; Priya Shyamsundar; Will Steffen; Gisbert Glaser; Norichika Kanie; Ian Noble
Journal:  Nature       Date:  2013-03-21       Impact factor: 49.962

4.  U6 snRNA genes of Arabidopsis are transcribed by RNA polymerase III but contain the same two upstream promoter elements as RNA polymerase II-transcribed U-snRNA genes.

Authors:  F Waibel; W Filipowicz
Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

5.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

6.  Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Authors:  Rachel E Haurwitz; Martin Jinek; Blake Wiedenheft; Kaihong Zhou; Jennifer A Doudna
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

7.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

8.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

9.  Engineering synthetic TAL effectors with orthogonal target sites.

Authors:  Abhishek Garg; Jason J Lohmueller; Pamela A Silver; Thomas Z Armel
Journal:  Nucleic Acids Res       Date:  2012-05-11       Impact factor: 16.971

10.  Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA.

Authors:  Michal Minczuk; Monika A Papworth; Jeffrey C Miller; Michael P Murphy; Aaron Klug
Journal:  Nucleic Acids Res       Date:  2008-05-29       Impact factor: 16.971

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  11 in total

1.  A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation.

Authors:  Levi G Lowder; Dengwei Zhang; Nicholas J Baltes; Joseph W Paul; Xu Tang; Xuelian Zheng; Daniel F Voytas; Tzung-Fu Hsieh; Yong Zhang; Yiping Qi
Journal:  Plant Physiol       Date:  2015-08-21       Impact factor: 8.340

Review 2.  Progress of targeted genome modification approaches in higher plants.

Authors:  Teodoro Cardi; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2016-03-29       Impact factor: 4.570

Review 3.  The expanding footprint of CRISPR/Cas9 in the plant sciences.

Authors:  Scott M Schaeffer; Paul A Nakata
Journal:  Plant Cell Rep       Date:  2016-04-30       Impact factor: 4.570

4.  Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems.

Authors:  Gerbert S Dossa; Adam Sparks; Casiana Vera Cruz; Ricardo Oliva
Journal:  Front Plant Sci       Date:  2015-05-05       Impact factor: 5.753

Review 5.  Biotechnological strategies and tools for Plum pox virus resistance: trans-, intra-, cis-genesis, and beyond.

Authors:  Vincenza Ilardi; Mario Tavazza
Journal:  Front Plant Sci       Date:  2015-06-08       Impact factor: 5.753

6.  PCR amplification of repetitive DNA: a limitation to genome editing technologies and many other applications.

Authors:  Carl Maximilian Hommelsheim; Lamprinos Frantzeskakis; Mengmeng Huang; Bekir Ülker
Journal:  Sci Rep       Date:  2014-05-23       Impact factor: 4.379

Review 7.  Tackling Unwanted Proteolysis in Plant Production Hosts Used for Molecular Farming.

Authors:  Manoj K Mandal; Houtan Ahvari; Stefan Schillberg; Andreas Schiermeyer
Journal:  Front Plant Sci       Date:  2016-03-08       Impact factor: 5.753

8.  Seamless editing of the chloroplast genome in plants.

Authors:  Elena Martin Avila; Martin F Gisby; Anil Day
Journal:  BMC Plant Biol       Date:  2016-07-29       Impact factor: 4.215

9.  Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9.

Authors:  Oliver Xiaoou Dong; Shu Yu; Rashmi Jain; Nan Zhang; Phat Q Duong; Corinne Butler; Yan Li; Anna Lipzen; Joel A Martin; Kerrie W Barry; Jeremy Schmutz; Li Tian; Pamela C Ronald
Journal:  Nat Commun       Date:  2020-03-04       Impact factor: 14.919

Review 10.  The CRISPR/Cas Genome-Editing Tool: Application in Improvement of Crops.

Authors:  Surender Khatodia; Kirti Bhatotia; Nishat Passricha; S M P Khurana; Narendra Tuteja
Journal:  Front Plant Sci       Date:  2016-04-19       Impact factor: 5.753

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