Literature DB >> 23005137

Bistable collective behavior of polymers tethered in a nanopore.

Dino Osmanovic1, Joe Bailey, Anthony H Harker, Ariberto Fassati, Bart W Hoogenboom, Ian J Ford.   

Abstract

Polymer-coated pores play a crucial role in nucleo-cytoplasmic transport and in a number of biomimetic and nanotechnological applications. Here we present Monte Carlo and Density Functional Theory approaches to identify different collective phases of end-grafted polymers in a nanopore and to study their relative stability as a function of intermolecular interactions. Over a range of system parameters that is relevant for nuclear pore complexes, we observe two distinct phases: one with the bulk of the polymers condensed at the wall of the pore, and the other with the polymers condensed along its central axis. The relative stability of these two phases depends on the interpolymer interactions. The existence the two phases suggests a mechanism in which marginal changes in these interactions, possibly induced by nuclear transport receptors, cause the pore to transform between open and closed configurations, which will influence transport through the pore.

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Year:  2012        PMID: 23005137     DOI: 10.1103/PhysRevE.85.061917

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  20 in total

1.  Enhanced Nucleocytoplasmic Transport due to Competition for Elastic Binding Sites.

Authors:  Ben Fogelson; James P Keener
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

2.  Spatiotemporal dynamics of the nuclear pore complex transport barrier resolved by high-speed atomic force microscopy.

Authors:  Yusuke Sakiyama; Adam Mazur; Larisa E Kapinos; Roderick Y H Lim
Journal:  Nat Nanotechnol       Date:  2016-05-02       Impact factor: 39.213

3.  Model inspired by nuclear pore complex suggests possible roles for nuclear transport receptors in determining its structure.

Authors:  Dino Osmanović; Ian J Ford; Bart W Hoogenboom
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

4.  A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.

Authors:  Patrick D Ellis Fisher; Qi Shen; Bernice Akpinar; Luke K Davis; Kenny Kwok Hin Chung; David Baddeley; Anđela Šarić; Thomas J Melia; Bart W Hoogenboom; Chenxiang Lin; C Patrick Lusk
Journal:  ACS Nano       Date:  2018-01-25       Impact factor: 15.881

5.  Crowding-induced phase separation of nuclear transport receptors in FG nucleoporin assemblies.

Authors:  Luke K Davis; Ian J Ford; Bart W Hoogenboom
Journal:  Elife       Date:  2022-01-31       Impact factor: 8.140

6.  Nuclear pore complex protein sequences determine overall copolymer brush structure and function.

Authors:  David Ando; Roya Zandi; Yong Woon Kim; Michael Colvin; Michael Rexach; Ajay Gopinathan
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

7.  Physical modeling of multivalent interactions in the nuclear pore complex.

Authors:  Luke K Davis; Anđela Šarić; Bart W Hoogenboom; Anton Zilman
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

8.  Cohesiveness tunes assembly and morphology of FG nucleoporin domain meshworks - Implications for nuclear pore permeability.

Authors:  Nico B Eisele; Aksana A Labokha; Steffen Frey; Dirk Görlich; Ralf P Richter
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

Review 9.  The Viral Capsid: A Master Key to Access the Host Nucleus.

Authors:  Guillermo Blanco-Rodriguez; Francesca Di Nunzio
Journal:  Viruses       Date:  2021-06-20       Impact factor: 5.048

Review 10.  The Role of Capsid in the Early Steps of HIV-1 Infection: New Insights into the Core of the Matter.

Authors:  Nawal AlBurtamani; Alwin Paul; Ariberto Fassati
Journal:  Viruses       Date:  2021-06-17       Impact factor: 5.048

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