Literature DB >> 29972802

Enhanced Nucleocytoplasmic Transport due to Competition for Elastic Binding Sites.

Ben Fogelson1, James P Keener2.   

Abstract

Nuclear pore complexes (NPCs) control all traffic into and out of the cell nucleus. NPCs are molecular machines that simultaneously achieve high selectivity and high transport rates. The biophysical details of how cargoes rapidly traverse the pore remain unclear but are known to be mediated by interactions between cargo-binding chaperone proteins and natively unstructured nucleoporin proteins containing many phenylalanine-glycine repeats (FG nups) that line the pore's central channel. Here, we propose a specific and detailed physical mechanism for the high speed of nuclear import based on the elasticity of FG nups and on competition between individual chaperone proteins for FG nup binding. We develop a mathematical model to support our proposed mechanism. We suggest that the recycling of nuclear import factors back to the cytoplasm is important for driving high-speed import and predict the existence of an optimal cytoplasmic concentration of cargo for enhancing the rate of import over a purely diffusive rate.
Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29972802      PMCID: PMC6035302          DOI: 10.1016/j.bpj.2018.05.034

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  54 in total

1.  Kinetic analysis of translocation through nuclear pore complexes.

Authors:  K Ribbeck; D Görlich
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

Review 2.  Virtual gating and nuclear transport: the hole picture.

Authors:  Michael P Rout; John D Aitchison; Marcelo O Magnasco; Brian T Chait
Journal:  Trends Cell Biol       Date:  2003-12       Impact factor: 20.808

3.  The nuclear pore complex mystery and anomalous diffusion in reversible gels.

Authors:  Thomas Bickel; Robijn Bruinsma
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

4.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

5.  Enzymatically driven transport: a kinetic theory for nuclear export.

Authors:  Sanghyun Kim; M Elbaum
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

6.  Nucleocytoplasmic transport: a thermodynamic mechanism.

Authors:  Ronen Benjamine Kopito; Michael Elbaum
Journal:  HFSP J       Date:  2009-03-18

7.  Characterization of the nuclear protein import mechanism using Ran mutants with altered nucleotide binding specificities.

Authors:  K Weis; C Dingwall; A I Lamond
Journal:  EMBO J       Date:  1996-12-16       Impact factor: 11.598

8.  Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex.

Authors:  Barak Raveh; Jerome M Karp; Samuel Sparks; Kaushik Dutta; Michael P Rout; Andrej Sali; David Cowburn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

9.  Nuclear pore complex protein sequences determine overall copolymer brush structure and function.

Authors:  David Ando; Roya Zandi; Yong Woon Kim; Michael Colvin; Michael Rexach; Ajay Gopinathan
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

10.  Cooperative Interactions between Different Classes of Disordered Proteins Play a Functional Role in the Nuclear Pore Complex of Baker's Yeast.

Authors:  David Ando; Ajay Gopinathan
Journal:  PLoS One       Date:  2017-01-09       Impact factor: 3.240

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  4 in total

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Journal:  Phys Rev E       Date:  2019-10       Impact factor: 2.529

2.  Bound-State Diffusion due to Binding to Flexible Polymers in a Selective Biofilter.

Authors:  Laura Maguire; Meredith D Betterton; Loren E Hough
Journal:  Biophys J       Date:  2019-11-26       Impact factor: 4.033

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Authors:  Shankar Lalitha Sridhar; Jeffrey Dunagin; Kanghyeon Koo; Loren Hough; Franck Vernerey
Journal:  Macromolecules       Date:  2021-02-10       Impact factor: 6.057

4.  Moving while you're stuck: a macroscopic demonstration of an active system inspired by binding-mediated transport in biology.

Authors:  Kanghyeon Koo; Shankar Lalitha Sridhar; Noel Clark; Franck Vernerey; Loren Hough
Journal:  Soft Matter       Date:  2021-03-18       Impact factor: 4.046

  4 in total

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