Literature DB >> 24138862

Cohesiveness tunes assembly and morphology of FG nucleoporin domain meshworks - Implications for nuclear pore permeability.

Nico B Eisele1, Aksana A Labokha, Steffen Frey, Dirk Görlich, Ralf P Richter.   

Abstract

Nuclear pore complexes control the exchange of macromolecules between the cytoplasm and the nucleus. A selective permeability barrier that arises from a supramolecular assembly of intrinsically unfolded nucleoporin domains rich in phenylalanine-glycine dipeptides (FG domains) fills the nuclear pore. There is increasing evidence that selective transport requires cohesive FG domain interactions. To understand the functional roles of cohesive interactions, we studied monolayers of end-grafted FG domains as a bottom-up nanoscale model system of the permeability barrier. Based on detailed physicochemical analysis of the model films and comparison of the data with polymer theory, we propose that cohesiveness is tuned to promote rapid assembly of the permeability barrier and to generate a stable and compact pore-filling meshwork with a small mesh size. Our results highlight the functional importance of weak interactions, typically a few kBT per chain, and contribute important information to understand the mechanism of size-selective transport.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24138862      PMCID: PMC3797576          DOI: 10.1016/j.bpj.2013.09.006

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  52 in total

Review 1.  Virtual gating and nuclear transport: the hole picture.

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Journal:  Trends Cell Biol       Date:  2003-12       Impact factor: 20.808

2.  Effects of flow on solute exchange between fluids and supported biosurfaces.

Authors:  Wim Th Hermens; Martin Benes; Ralf Richter; Han Speijer
Journal:  Biotechnol Appl Biochem       Date:  2004-06       Impact factor: 2.431

3.  Self-regulated viscous channel in the nuclear pore complex.

Authors:  Jiong Ma; Alexander Goryaynov; Ashapurna Sarma; Weidong Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

4.  A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins.

Authors:  Justin Yamada; Joshua L Phillips; Samir Patel; Gabriel Goldfien; Alison Calestagne-Morelli; Hans Huang; Ryan Reza; Justin Acheson; Viswanathan V Krishnan; Shawn Newsam; Ajay Gopinathan; Edmond Y Lau; Michael E Colvin; Vladimir N Uversky; Michael F Rexach
Journal:  Mol Cell Proteomics       Date:  2010-04-05       Impact factor: 5.911

5.  Monitoring the dynamics of ligand-receptor complexes on model membranes.

Authors:  Suman Lata; Martynas Gavutis; Jacob Piehler
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

Review 6.  Structural biology of nucleocytoplasmic transport.

Authors:  Atlanta Cook; Fulvia Bono; Martin Jinek; Elena Conti
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

7.  High-affinity adaptors for switchable recognition of histidine-tagged proteins.

Authors:  Suman Lata; Annett Reichel; Roland Brock; Robert Tampé; Jacob Piehler
Journal:  J Am Chem Soc       Date:  2005-07-27       Impact factor: 15.419

8.  Formation of solid-supported lipid bilayers: an integrated view.

Authors:  Ralf P Richter; Rémi Bérat; Alain R Brisson
Journal:  Langmuir       Date:  2006-04-11       Impact factor: 3.882

9.  Rapid evolution exposes the boundaries of domain structure and function in natively unfolded FG nucleoporins.

Authors:  Daniel P Denning; Michael F Rexach
Journal:  Mol Cell Proteomics       Date:  2006-11-01       Impact factor: 5.911

10.  Bistable collective behavior of polymers tethered in a nanopore.

Authors:  Dino Osmanovic; Joe Bailey; Anthony H Harker; Ariberto Fassati; Bart W Hoogenboom; Ian J Ford
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-06-21
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  21 in total

1.  The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins.

Authors:  Chad Gu; Andrei Vovk; Tiantian Zheng; Rob D Coalson; Anton Zilman
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

2.  Investigating molecular crowding within nuclear pores using polarization-PALM.

Authors:  Guo Fu; Li-Chun Tu; Anton Zilman; Siegfried M Musser
Journal:  Elife       Date:  2017-09-26       Impact factor: 8.140

3.  Charge Influences Substrate Recognition and Self-Assembly of Hydrophobic FG Sequences.

Authors:  Wesley G Chen; Jacob Witten; Scott C Grindy; Niels Holten-Andersen; Katharina Ribbeck
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

4.  Effect of calcium ions and pH on the morphology and mechanical properties of hyaluronan brushes.

Authors:  Xinyue Chen; Ralf P Richter
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

5.  Digested disorder, Quarterly intrinsic disorder digest (October-November-December, 2013).

Authors:  Shelly DeForte; Krishna D Reddy; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2015-03-09

6.  A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.

Authors:  Patrick D Ellis Fisher; Qi Shen; Bernice Akpinar; Luke K Davis; Kenny Kwok Hin Chung; David Baddeley; Anđela Šarić; Thomas J Melia; Bart W Hoogenboom; Chenxiang Lin; C Patrick Lusk
Journal:  ACS Nano       Date:  2018-01-25       Impact factor: 15.881

7.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

8.  A simple thermodynamic description of phase separation of Nup98 FG domains.

Authors:  Sheung Chun Ng; Dirk Görlich
Journal:  Nat Commun       Date:  2022-10-18       Impact factor: 17.694

Review 9.  Deciphering the Structure and Function of Nuclear Pores Using Single-Molecule Fluorescence Approaches.

Authors:  Siegfried M Musser; David Grünwald
Journal:  J Mol Biol       Date:  2016-03-02       Impact factor: 5.469

10.  DNA-Origami NanoTrap for Studying the Selective Barriers Formed by Phenylalanine-Glycine-Rich Nucleoporins.

Authors:  Qi Shen; Taoran Tian; Qiancheng Xiong; Patrick D Ellis Fisher; Yong Xiong; Thomas J Melia; C Patrick Lusk; Chenxiang Lin
Journal:  J Am Chem Soc       Date:  2021-07-29       Impact factor: 16.383

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