Literature DB >> 23000032

Functional dynamics of proteins revealed by solution NMR.

Masanori Osawa1, Koh Takeuchi, Takumi Ueda, Noritaka Nishida, Ichio Shimada.   

Abstract

Solution NMR spectroscopy can analyze the dynamics of proteins on a wide range of timescales, from picoseconds to even days, in a site-specific manner, and thus its results are complementary to the detailed but largely static structural information obtained by X-ray crystallography. We review recent progresses in a variety of NMR techniques, including relaxation dispersion and paramagnetic relaxation enhancement (PRE), that permit the observation of the low-populated states, which had been 'invisible' with other techniques. In addition, we review how NMR spectroscopy can be used to elucidate functionally relevant protein dynamics.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23000032     DOI: 10.1016/j.sbi.2012.08.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  NMR-based conformational ensembles explain pH-gated opening and closing of OmpG channel.

Authors:  Tiandi Zhuang; Christina Chisholm; Min Chen; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

Review 2.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

3.  From sequence and forces to structure, function, and evolution of intrinsically disordered proteins.

Authors:  Julie D Forman-Kay; Tanja Mittag
Journal:  Structure       Date:  2013-09-03       Impact factor: 5.006

Review 4.  Function-related conformational dynamics of G protein-coupled receptors revealed by NMR.

Authors:  Takumi Ueda; Yutaka Kofuku; Junya Okude; Shunsuke Imai; Yutaro Shiraishi; Ichio Shimada
Journal:  Biophys Rev       Date:  2019-05-17

Review 5.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

Review 6.  Shake, rattle, and roll: Impact of the dynamics of flavivirus particles on their interactions with the host.

Authors:  Richard J Kuhn; Kimberly A Dowd; Carol Beth Post; Theodore C Pierson
Journal:  Virology       Date:  2015-03-30       Impact factor: 3.616

7.  Non-Uniform Sampling and J-UNIO Automation for Efficient Protein NMR Structure Determination.

Authors:  Tatiana Didenko; Andrew Proudfoot; Samit Kumar Dutta; Pedro Serrano; Kurt Wüthrich
Journal:  Chemistry       Date:  2015-07-28       Impact factor: 5.236

8.  Quantification of Drive-Response Relationships Between Residues During Protein Folding.

Authors:  Yifei Qi; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

Review 9.  Revealing the Mechanisms of Protein Disorder and N-Glycosylation in CD44-Hyaluronan Binding Using Molecular Simulation.

Authors:  Olgun Guvench
Journal:  Front Immunol       Date:  2015-06-16       Impact factor: 7.561

10.  Evidence against the "Y-T coupling" mechanism of activation in the response regulator NtrC.

Authors:  Janice Villali; Francesco Pontiggia; Michael W Clarkson; Michael F Hagan; Dorothee Kern
Journal:  J Mol Biol       Date:  2014-01-07       Impact factor: 5.469

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