Literature DB >> 22999889

Probing the diverse landscape of protein flexibility and binding.

Joseph A Marsh1, Sarah A Teichmann, Julie D Forman-Kay.   

Abstract

Protein flexibility spans a broad spectrum, from highly stable folded to intrinsically disordered states. In this review, we discuss how various techniques, including X-ray crystallography, nuclear magnetic resonance spectroscopy and ensemble-modeling strategies employing various experimental measurements, have enabled detailed structural and dynamic characterizations of proteins in their free and bound states. This has revealed a variety of possible binding scenarios in which flexibility can either decrease or increase upon binding. Furthermore, dynamic free-state ensembles have repeatedly been observed to contain transiently formed conformations that partially or completely resemble bound states. These results demonstrate an intimate connection between protein flexibility and protein interactions and illustrate the huge diversity of structure and dynamics in both free proteins and protein complexes.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22999889     DOI: 10.1016/j.sbi.2012.08.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  43 in total

1.  Improved validation of IDP ensembles by one-bond Cα-Hα scalar couplings.

Authors:  Vytautas Gapsys; Raghavendran L Narayanan; ShengQi Xiang; Bert L de Groot; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2015-10-03       Impact factor: 2.835

Review 2.  Expanding the Range of Protein Function at the Far End of the Order-Structure Continuum.

Authors:  Virginia M Burger; Diego O Nolasco; Collin M Stultz
Journal:  J Biol Chem       Date:  2016-02-05       Impact factor: 5.157

3.  CD44 receptor unfolding enhances binding by freeing basic amino acids to contact carbohydrate ligand.

Authors:  Amanda J Favreau; Christina E Faller; Olgun Guvench
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

4.  Variability of the Cyclin-Dependent Kinase 2 Flexibility Without Significant Change in the Initial Conformation of the Protein or Its Environment; a Computational Study.

Authors:  Mohammad Taghizadeh; Bahram Goliaei; Armin Madadkar-Sobhani
Journal:  Iran J Biotechnol       Date:  2016-06       Impact factor: 1.671

5.  Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells.

Authors:  Wade Borcherds; François-Xavier Theillet; Andrea Katzer; Ana Finzel; Katie M Mishall; Anne T Powell; Hongwei Wu; Wanda Manieri; Christoph Dieterich; Philipp Selenko; Alexander Loewer; Gary W Daughdrill
Journal:  Nat Chem Biol       Date:  2014-11-02       Impact factor: 15.040

Review 6.  Receptor-ligand molecular docking.

Authors:  Isabella A Guedes; Camila S de Magalhães; Laurent E Dardenne
Journal:  Biophys Rev       Date:  2013-12-21

7.  Biophysics of protein evolution and evolutionary protein biophysics.

Authors:  Tobias Sikosek; Hue Sun Chan
Journal:  J R Soc Interface       Date:  2014-11-06       Impact factor: 4.118

8.  Conformational Dynamics of the Partially Disordered Yeast Transcription Factor GCN4.

Authors:  Paul Robustelli; Nikola Trbovic; Richard A Friesner; Arthur G Palmer
Journal:  J Chem Theory Comput       Date:  2013-11-01       Impact factor: 6.006

9.  Temperature-dependent solvation modulates the dimensions of disordered proteins.

Authors:  René Wuttke; Hagen Hofmann; Daniel Nettels; Madeleine B Borgia; Jeetain Mittal; Robert B Best; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-21       Impact factor: 11.205

10.  Evol and ProDy for bridging protein sequence evolution and structural dynamics.

Authors:  Ahmet Bakan; Anindita Dutta; Wenzhi Mao; Ying Liu; Chakra Chennubhotla; Timothy R Lezon; Ivet Bahar
Journal:  Bioinformatics       Date:  2014-05-21       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.