Literature DB >> 25362358

Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells.

Wade Borcherds1, François-Xavier Theillet2, Andrea Katzer3, Ana Finzel3, Katie M Mishall1, Anne T Powell1, Hongwei Wu1, Wanda Manieri4, Christoph Dieterich5, Philipp Selenko2, Alexander Loewer3, Gary W Daughdrill1.   

Abstract

Levels of residual structure in disordered interaction domains determine in vitro binding affinities, but whether they exert similar roles in cells is not known. Here, we show that increasing residual p53 helicity results in stronger Mdm2 binding, altered p53 dynamics, impaired target gene expression and failure to induce cell cycle arrest upon DNA damage. These results establish that residual structure is an important determinant of signaling fidelity in cells.

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Year:  2014        PMID: 25362358     DOI: 10.1038/nchembio.1668

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  35 in total

Review 1.  Blinded by the Light: The Growing Complexity of p53.

Authors:  Karen H Vousden; Carol Prives
Journal:  Cell       Date:  2009-05-01       Impact factor: 41.582

2.  Distinct mechanisms act in concert to mediate cell cycle arrest.

Authors:  Jared E Toettcher; Alexander Loewer; Gerard J Ostheimer; Michael B Yaffe; Bruce Tidor; Galit Lahav
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-12       Impact factor: 11.205

3.  Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage.

Authors:  Eric Batchelor; Caroline S Mock; Irun Bhan; Alexander Loewer; Galit Lahav
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

4.  Site-specific NMR mapping and time-resolved monitoring of serine and threonine phosphorylation in reconstituted kinase reactions and mammalian cell extracts.

Authors:  Francois-Xavier Theillet; Honor May Rose; Stamatios Liokatis; Andres Binolfi; Rossukon Thongwichian; Marchel Stuiver; Philipp Selenko
Journal:  Nat Protoc       Date:  2013-06-27       Impact factor: 13.491

5.  Helical propensity in an intrinsically disordered protein accelerates ligand binding.

Authors:  Vytautas Iešmantavičius; Jakob Dogan; Per Jemth; Kaare Teilum; Magnus Kjaergaard
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-21       Impact factor: 15.336

6.  Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain.

Authors:  P H Kussie; S Gorina; V Marechal; B Elenbaas; J Moreau; A J Levine; N P Pavletich
Journal:  Science       Date:  1996-11-08       Impact factor: 47.728

7.  WAF1, a potential mediator of p53 tumor suppression.

Authors:  W S el-Deiry; T Tokino; V E Velculescu; D B Levy; R Parsons; J M Trent; D Lin; W E Mercer; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1993-11-19       Impact factor: 41.582

8.  Systematic mutational analysis of peptide inhibition of the p53-MDM2/MDMX interactions.

Authors:  Chong Li; Marzena Pazgier; Changqing Li; Weirong Yuan; Min Liu; Gang Wei; Wei-Yue Lu; Wuyuan Lu
Journal:  J Mol Biol       Date:  2010-03-10       Impact factor: 5.469

9.  Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis.

Authors:  F Nikulenkov; C Spinnler; H Li; C Tonelli; Y Shi; M Turunen; T Kivioja; I Ignatiev; A Kel; J Taipale; G Selivanova
Journal:  Cell Death Differ       Date:  2012-07-13       Impact factor: 15.828

10.  Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells.

Authors:  Daniel Menendez; Thuy-Ai Nguyen; Johannes M Freudenberg; Viju J Mathew; Carl W Anderson; Raja Jothi; Michael A Resnick
Journal:  Nucleic Acids Res       Date:  2013-06-17       Impact factor: 16.971

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  73 in total

1.  The cis conformation of proline leads to weaker binding of a p53 peptide to MDM2 compared to trans.

Authors:  Yingqian Ada Zhan; F Marty Ytreberg
Journal:  Arch Biochem Biophys       Date:  2015-04-01       Impact factor: 4.013

2.  Protein dynamics: tuning disorder propensity in p53.

Authors:  Richard W Kriwacki
Journal:  Nat Chem Biol       Date:  2014-12       Impact factor: 15.040

Review 3.  Markov State Models to Elucidate Ligand Binding Mechanism.

Authors:  Yunhui Ge; Vincent A Voelz
Journal:  Methods Mol Biol       Date:  2021

Review 4.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

5.  Long-range regulation of p53 DNA binding by its intrinsically disordered N-terminal transactivation domain.

Authors:  Alexander S Krois; H Jane Dyson; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-12       Impact factor: 11.205

6.  Using NMR Chemical Shifts to Determine Residue-Specific Secondary Structure Populations for Intrinsically Disordered Proteins.

Authors:  Wade M Borcherds; Gary W Daughdrill
Journal:  Methods Enzymol       Date:  2018-10-22       Impact factor: 1.600

7.  Modulation of the aggregation of an amyloidogenic sequence by flanking-disordered region in the intrinsically disordered antigen merozoite surface protein 2.

Authors:  Wei Zhang; Jiahai Zhang; Christopher A MacRaild; Raymond S Norton; Robin F Anders; Xuecheng Zhang
Journal:  Eur Biophys J       Date:  2018-11-15       Impact factor: 1.733

8.  Sequence Reversal Prevents Chain Collapse and Yields Heat-Sensitive Intrinsic Disorder.

Authors:  Lance R English; Alexander Tischer; Aysha K Demeler; Borries Demeler; Steven T Whitten
Journal:  Biophys J       Date:  2018-07-17       Impact factor: 4.033

Review 9.  Structural metamorphism and polymorphism in proteins on the brink of thermodynamic stability.

Authors:  Prakash Kulkarni; Tsega L Solomon; Yanan He; Yihong Chen; Philip N Bryan; John Orban
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

10.  Intrinsically Disordered Proteins: Structure, Function and Therapeutics.

Authors:  Jianhan Chen; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-06-12       Impact factor: 5.469

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