Literature DB >> 26851282

Expanding the Range of Protein Function at the Far End of the Order-Structure Continuum.

Virginia M Burger1, Diego O Nolasco1, Collin M Stultz2.   

Abstract

The traditional view of the structure-function paradigm is that a protein's function is inextricably linked to a well defined, three-dimensional structure, which is determined by the protein's primary amino acid sequence. However, it is now accepted that a number of proteins do not adopt a unique tertiary structure in solution and that some degree of disorder is required for many proteins to perform their prescribed functions. In this review, we highlight how a number of protein functions are facilitated by intrinsic disorder and introduce a new protein structure taxonomy that is based on quantifiable metrics of a protein's disorder.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  biophysics; conformational change; intrinsically disordered protein; protein folding; protein structure

Mesh:

Substances:

Year:  2016        PMID: 26851282      PMCID: PMC4807258          DOI: 10.1074/jbc.R115.692590

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  80 in total

1.  Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G.

Authors:  J Marcotrigiano; A C Gingras; N Sonenberg; S K Burley
Journal:  Mol Cell       Date:  1999-06       Impact factor: 17.970

2.  High-resolution structure of the OmpA membrane domain.

Authors:  A Pautsch; G E Schulz
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

3.  Local structural elements in the mostly unstructured transcriptional activation domain of human p53.

Authors:  H Lee; K H Mok; R Muhandiram; K H Park; J E Suk; D H Kim; J Chang; Y C Sung; K Y Choi; K H Han
Journal:  J Biol Chem       Date:  2000-09-22       Impact factor: 5.157

4.  Speeding molecular recognition by using the folding funnel: the fly-casting mechanism.

Authors:  B A Shoemaker; J J Portman; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

5.  Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators.

Authors:  Stephen J Demarest; Maria Martinez-Yamout; John Chung; Hongwu Chen; Wei Xu; H Jane Dyson; Ronald M Evans; Peter E Wright
Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

6.  The solution structure of the viral binding domain of Tva, the cellular receptor for subgroup A avian leukosis and sarcoma virus.

Authors:  M Tonelli; R J Peters; T L James; D A Agard
Journal:  FEBS Lett       Date:  2001-12-07       Impact factor: 4.124

7.  A small domain of CBP/p300 binds diverse proteins: solution structure and functional studies.

Authors:  C H Lin; B J Hare; G Wagner; S C Harrison; T Maniatis; E Fraenkel
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

Review 8.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

9.  Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism.

Authors:  A C Gingras; S P Gygi; B Raught; R D Polakiewicz; R T Abraham; M F Hoekstra; R Aebersold; N Sonenberg
Journal:  Genes Dev       Date:  1999-06-01       Impact factor: 11.361

Review 10.  Intrinsically disordered protein.

Authors:  A K Dunker; J D Lawson; C J Brown; R M Williams; P Romero; J S Oh; C J Oldfield; A M Campen; C M Ratliff; K W Hipps; J Ausio; M S Nissen; R Reeves; C Kang; C R Kissinger; R W Bailey; M D Griswold; W Chiu; E C Garner; Z Obradovic
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

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  8 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

2.  Quantifying Allosteric Communication via Both Concerted Structural Changes and Conformational Disorder with CARDS.

Authors:  Sukrit Singh; Gregory R Bowman
Journal:  J Chem Theory Comput       Date:  2017-03-22       Impact factor: 6.006

3.  Introduction to the Thematic Minireview Series on Intrinsically Disordered Proteins.

Authors:  Ruma Banerjee
Journal:  J Biol Chem       Date:  2016-02-05       Impact factor: 5.157

Review 4.  Intrinsically disordered proteins in synaptic vesicle trafficking and release.

Authors:  David Snead; David Eliezer
Journal:  J Biol Chem       Date:  2019-01-30       Impact factor: 5.486

Review 5.  Behaviour of intrinsically disordered proteins in protein-protein complexes with an emphasis on fuzziness.

Authors:  Johan G Olsen; Kaare Teilum; Birthe B Kragelund
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

Review 6.  Epichromatin and chromomeres: a 'fuzzy' perspective.

Authors:  Donald E Olins; Ada L Olins
Journal:  Open Biol       Date:  2018-06       Impact factor: 6.411

Review 7.  The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease.

Authors:  M Madan Babu
Journal:  Biochem Soc Trans       Date:  2016-10-15       Impact factor: 5.407

Review 8.  How C-Reactive Protein Structural Isoforms With Distinctive Bioactivities Affect Disease Progression.

Authors:  Ibraheem M Rajab; Peter C Hart; Lawrence A Potempa
Journal:  Front Immunol       Date:  2020-09-10       Impact factor: 7.561

  8 in total

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