Literature DB >> 24706910

Temperature-dependent solvation modulates the dimensions of disordered proteins.

René Wuttke1, Hagen Hofmann, Daniel Nettels, Madeleine B Borgia, Jeetain Mittal, Robert B Best, Benjamin Schuler.   

Abstract

For disordered proteins, the dimensions of the chain are an important property that is sensitive to environmental conditions. We have used single-molecule Förster resonance energy transfer to probe the temperature-induced chain collapse of five unfolded or intrinsically disordered proteins. Because this behavior is sensitive to the details of intrachain and chain-solvent interactions, the collapse allows us to probe the physical interactions governing the dimensions of disordered proteins. We find that each of the proteins undergoes a collapse with increasing temperature, with the most hydrophobic one, λ-repressor, undergoing a reexpansion at the highest temperatures. Although such a collapse might be expected due to the temperature dependence of the classical "hydrophobic effect," remarkably we find that the largest collapse occurs for the most hydrophilic, charged sequences. Using a combination of theory and simulation, we show that this result can be rationalized in terms of the temperature-dependent solvation free energies of the constituent amino acids, with the solvation properties of the most hydrophilic residues playing a large part in determining the collapse.

Entities:  

Keywords:  ABSINTH; HIV integrase; Sanchez theory; cold shock protein; prothymosin α

Mesh:

Year:  2014        PMID: 24706910      PMCID: PMC3986154          DOI: 10.1073/pnas.1313006111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  70 in total

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4.  Structural biology. Versatility from protein disorder.

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5.  Solvation thermodynamics and heat capacity of polar and charged solutes in water.

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6.  Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

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Review 8.  How, when and why proteins collapse: the relation to folding.

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Review 9.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

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Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

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  57 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

5.  The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures.

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6.  Temperature-induced collapse of a disordered peptide observed by three sampling methods in molecular dynamics simulations.

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7.  Quantitative interpretation of FRET experiments via molecular simulation: force field and validation.

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Journal:  Biophys J       Date:  2015-06-02       Impact factor: 4.033

8.  Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations.

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Journal:  J Phys Chem B       Date:  2015-11-10       Impact factor: 2.991

9.  Empirical Optimization of Interactions between Proteins and Chemical Denaturants in Molecular Simulations.

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10.  Effects of Mutations on the Reconfiguration Rate of α-Synuclein.

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