Literature DB >> 22982193

The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states.

Brett N Tomson1, Karen M Arndt.   

Abstract

The Paf1 complex was originally identified over fifteen years ago in budding yeast through its physical association with RNA polymerase II. The Paf1 complex is now known to be conserved throughout eukaryotes and is well studied for promoting RNA polymerase II transcription elongation and transcription-coupled histone modifications. Through these critical regulatory functions, the Paf1 complex participates in numerous cellular processes such as gene expression and silencing, RNA maturation, DNA repair, cell cycle progression and prevention of disease states in higher eukaryotes. In this review, we describe the historic and current research involving the eukaryotic Paf1 complex to explain the cellular roles that underlie its conservation and functional importance. This article is part of a Special Issue entitled: RNA polymerase II Transcript Elongation.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22982193      PMCID: PMC3541448          DOI: 10.1016/j.bbagrm.2012.08.011

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  178 in total

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Authors:  Elia M Crisucci; Karen M Arndt
Journal:  Eukaryot Cell       Date:  2011-04-15

2.  Structure and DNA binding of the human Rtf1 Plus3 domain.

Authors:  Rob N de Jong; Vincent Truffault; Tammo Diercks; Eiso Ab; Mark A Daniels; Rob Kaptein; Gert E Folkers
Journal:  Structure       Date:  2008-01       Impact factor: 5.006

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Journal:  Cell Stem Cell       Date:  2009-04-02       Impact factor: 24.633

4.  A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors.

Authors:  Cristina Tous; Ana G Rondón; María García-Rubio; Cristina González-Aguilera; Rosa Luna; Andrés Aguilera
Journal:  EMBO J       Date:  2011-04-08       Impact factor: 11.598

5.  Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae.

Authors:  Brett N Tomson; Christopher P Davis; Marcie H Warner; Karen M Arndt
Journal:  Genetics       Date:  2011-03-24       Impact factor: 4.562

6.  A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.

Authors:  Kristi L Penheiter; Taylor M Washburn; Stephanie E Porter; Matthew G Hoffman; Judith A Jaehning
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Review 7.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

8.  The C-terminal repeat domain of Spt5 plays an important role in suppression of Rad26-independent transcription coupled repair.

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Review 9.  Parafibromin--functional insights.

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10.  The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.

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  74 in total

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Journal:  J Biol Chem       Date:  2015-11-13       Impact factor: 5.157

2.  The recruitment of the Saccharomyces cerevisiae Paf1 complex to active genes requires a domain of Rtf1 that directly interacts with the Spt4-Spt5 complex.

Authors:  Manasi K Mayekar; Richard G Gardner; Karen M Arndt
Journal:  Mol Cell Biol       Date:  2013-06-17       Impact factor: 4.272

Review 3.  Pathogenesis of Börjeson-Forssman-Lehmann syndrome: Insights from PHF6 function.

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4.  Mechanisms of mixed-lineage leukemia.

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Review 5.  Chromatin modification by the RNA Polymerase II elongation complex.

Authors:  Jason C Tanny
Journal:  Transcription       Date:  2015-01-07

6.  Molecular biology: RNA interference hangs by a thread.

Authors:  Mikel Zaratiegui
Journal:  Nature       Date:  2015-03-25       Impact factor: 49.962

7.  Opposing functions of H2BK120 ubiquitylation and H3K79 methylation in the regulation of pluripotency by the Paf1 complex.

Authors:  Alexandros Strikoudis; Charalampos Lazaris; Panagiotis Ntziachristos; Aristotelis Tsirigos; Iannis Aifantis
Journal:  Cell Cycle       Date:  2017       Impact factor: 4.534

Review 8.  Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved?

Authors:  Yinfeng Zhang; Saman M Najmi; David A Schneider
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2016-10-27       Impact factor: 4.490

9.  PAF1 regulation of promoter-proximal pause release via enhancer activation.

Authors:  Fei Xavier Chen; Peng Xie; Clayton K Collings; Kaixiang Cao; Yuki Aoi; Stacy A Marshall; Emily J Rendleman; Michal Ugarenko; Patrick A Ozark; Anda Zhang; Ramin Shiekhattar; Edwin R Smith; Michael Q Zhang; Ali Shilatifard
Journal:  Science       Date:  2017-08-31       Impact factor: 47.728

10.  RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression.

Authors:  Maria L Kireeva; Mikhail Kashlev; Zachary F Burton
Journal:  Chem Rev       Date:  2013-11-13       Impact factor: 60.622

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