Literature DB >> 25494544

Chromatin modification by the RNA Polymerase II elongation complex.

Jason C Tanny1.   

Abstract

Transcription elongation by RNA polymerase II (RNAP II) involves the coordinated action of numerous regulatory factors. Among these are chromatin-modifying enzymes, which generate a stereotypic and conserved pattern of histone modifications along transcribed genes. This pattern implies a precise coordination between regulators of histone modification and the RNAP II elongation complex. Here I review the pathways and molecular events that regulate co-transcriptional histone modifications. Insight into these events will illuminate the assembly of functional RNAP II elongation complexes and how the chromatin landscape influences their composition and function.

Keywords:  Cdk7; Cdk9; H3K4 methylation; histone H2B ubiquitylation; histone modifications; transcription elongation

Mesh:

Substances:

Year:  2015        PMID: 25494544      PMCID: PMC4581355          DOI: 10.4161/21541264.2014.988093

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  116 in total

1.  The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.

Authors:  Adam Wood; Jessica Schneider; Jim Dover; Mark Johnston; Ali Shilatifard
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

2.  Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation.

Authors:  Amita A Joshi; Kevin Struhl
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

3.  Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1.

Authors:  Ming Li; Hemali P Phatnani; Ziqiang Guan; Harvey Sage; Arno L Greenleaf; Pei Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

4.  Drosophila Paf1 modulates chromatin structure at actively transcribed genes.

Authors:  Karen Adelman; Wenxiang Wei; M Behfar Ardehali; Janis Werner; Bing Zhu; Danny Reinberg; John T Lis
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

5.  Dichotomous but stringent substrate selection by the dual-function Cdk7 complex revealed by chemical genetics.

Authors:  Stéphane Larochelle; Jasmin Batliner; Matthew J Gamble; Nora M Barboza; Brian C Kraybill; Justin D Blethrow; Kevan M Shokat; Robert P Fisher
Journal:  Nat Struct Mol Biol       Date:  2005-12-04       Impact factor: 15.369

6.  Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.

Authors:  Bing Zhu; Yong Zheng; Anh-Dung Pham; Subhrangsu S Mandal; Hediye Erdjument-Bromage; Paul Tempst; Danny Reinberg
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

7.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

8.  Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.

Authors:  Erika Vojnic; Bernd Simon; Brian D Strahl; Michael Sattler; Patrick Cramer
Journal:  J Biol Chem       Date:  2005-11-14       Impact factor: 5.157

9.  Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.

Authors:  Michael-Christopher Keogh; Siavash K Kurdistani; Stephanie A Morris; Seong Hoon Ahn; Vladimir Podolny; Sean R Collins; Maya Schuldiner; Kayu Chin; Thanuja Punna; Natalie J Thompson; Charles Boone; Andrew Emili; Jonathan S Weissman; Timothy R Hughes; Brian D Strahl; Michael Grunstein; Jack F Greenblatt; Stephen Buratowski; Nevan J Krogan
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

10.  P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation.

Authors:  Tomoko Yamada; Yuki Yamaguchi; Naoto Inukai; Sachiko Okamoto; Takashi Mura; Hiroshi Handa
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

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  18 in total

1.  Opposing functions of H2BK120 ubiquitylation and H3K79 methylation in the regulation of pluripotency by the Paf1 complex.

Authors:  Alexandros Strikoudis; Charalampos Lazaris; Panagiotis Ntziachristos; Aristotelis Tsirigos; Iannis Aifantis
Journal:  Cell Cycle       Date:  2017       Impact factor: 4.534

2.  Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms.

Authors:  Jennifer J Chen; Jean Mbogning; Mark A Hancock; Dorsa Majdpour; Manan Madhok; Hassan Nassour; Juliana C Dallagnol; Viviane Pagé; David Chatenet; Jason C Tanny
Journal:  Mol Cell Biol       Date:  2020-07-14       Impact factor: 4.272

3.  The plant RNA polymerase II elongation complex: A hub coordinating transcript elongation and mRNA processing.

Authors:  Marion Grasser; Klaus D Grasser
Journal:  Transcription       Date:  2017-10-04

4.  Cell-free transcription in Xenopus egg extract.

Authors:  John K Barrows; David T Long
Journal:  J Biol Chem       Date:  2019-11-15       Impact factor: 5.157

5.  The CTD Is Not Essential for the Post-Initiation Control of RNA Polymerase II Activity.

Authors:  Alan Gerber; Robert G Roeder
Journal:  J Mol Biol       Date:  2020-07-21       Impact factor: 5.469

6.  Histone H2B Ubiquitylation Regulates Histone Gene Expression by Suppressing Antisense Transcription in Fission Yeast.

Authors:  Viviane Pagé; Jennifer J Chen; Mickael Durand-Dubief; David Grabowski; Eriko Oya; Miriam Sansô; Ryan D Martin; Terence E Hébert; Robert P Fisher; Karl Ekwall; Jason C Tanny
Journal:  Genetics       Date:  2019-07-25       Impact factor: 4.562

7.  Setd5 is essential for mammalian development and the co-transcriptional regulation of histone acetylation.

Authors:  Anna B Osipovich; Rama Gangula; Pedro G Vianna; Mark A Magnuson
Journal:  Development       Date:  2016-11-18       Impact factor: 6.868

8.  A Role for Monomethylation of Histone H3-K27 in Gene Activity in Drosophila.

Authors:  Liangjun Wang; Preeti Joshi; Ellen L Miller; LeeAnn Higgins; Matthew Slattery; Jeffrey A Simon
Journal:  Genetics       Date:  2017-12-14       Impact factor: 4.562

Review 9.  Old cogs, new tricks: the evolution of gene expression in a chromatin context.

Authors:  Paul B Talbert; Michael P Meers; Steven Henikoff
Journal:  Nat Rev Genet       Date:  2019-05       Impact factor: 53.242

Review 10.  New connections between ubiquitylation and methylation in the co-transcriptional histone modification network.

Authors:  Daniel Pinto; Vivane Pagé; Robert P Fisher; Jason C Tanny
Journal:  Curr Genet       Date:  2021-06-05       Impact factor: 2.695

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