Literature DB >> 22969604

1-{[Dimeth-yl(phen-yl)sil-yl]meth-yl}-3-(2-phenyl-eth-yl)-1H-benzimidazol-3-ium bromide monohydrate.

Mehmet Akkurt, Hasan Küçükbay, Nihat Sireci, Orhan Büyükgüngör.   

Abstract

The title compound, C(24)H(27)N(2)Si(+)·Br(-)·H(2)O, was synthesized from 1-(dimethyl-phenyl-silylmeth-yl)-1H-benzimidazole and (2-bromo-eth-yl)benzene in dimethyl-formamide. The benzimidazole ring system is nearly planar, with a maximum deviation of 0.015 (5) Å, and forms dihedral angles of 73.0 (3) and 39.6 (2)°, with the phenyl rings. In the crystal, mol-ecules are linked by O-H⋯Br, C-H⋯Br and C-H⋯O hydrogen bonds. In addition, the structure features π-π stacking inter-actions, with a face-to-face separation of 3.644 (3) Å between parallel benzimidazole ring systems.

Entities:  

Year:  2012        PMID: 22969604      PMCID: PMC3435733          DOI: 10.1107/S1600536812034915

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to benzimidazole derivatives, see: Lukevics et al. (2001 ▶); Tavman et al. (2005 ▶); Küçükbay et al. (1995 ▶, 2004 ▶, 2010 ▶, 2011 ▶); Yılmaz et al. (2011 ▶); Çetinkaya et al. (1996 ▶). For similar structures, see: Akkurt et al. (2010a ▶,b ▶); Baktır et al. (2010 ▶).

Experimental

Crystal data

C24H27N2SiBr−·H2O M = 469.48 Monoclinic, a = 15.1750 (11) Å b = 8.9097 (6) Å c = 17.9440 (14) Å β = 96.235 (6)° V = 2411.8 (3) Å3 Z = 4 Mo Kα radiation μ = 1.77 mm−1 T = 296 K 0.26 × 0.20 × 0.13 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.656, T max = 0.803 19519 measured reflections 5536 independent reflections 3023 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.173 S = 1.03 5536 reflections 244 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.82 e Å−3 Δρmin = −0.53 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034915/nr2031sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034915/nr2031Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034915/nr2031Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H27N2Si+·Br·H2OF(000) = 976
Mr = 469.48Dx = 1.293 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16623 reflections
a = 15.1750 (11) Åθ = 1.9–28.0°
b = 8.9097 (6) ŵ = 1.77 mm1
c = 17.9440 (14) ÅT = 296 K
β = 96.235 (6)°Prism, colourless
V = 2411.8 (3) Å30.26 × 0.20 × 0.13 mm
Z = 4
Stoe IPDS 2 diffractometer5536 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3023 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.074
Detector resolution: 6.67 pixels mm-1θmax = 27.7°, θmin = 2.3°
ω scansh = −19→19
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −11→11
Tmin = 0.656, Tmax = 0.803l = −23→22
19519 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.173H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0795P)2 + 0.0123P] where P = (Fo2 + 2Fc2)/3
5536 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.82 e Å3
3 restraintsΔρmin = −0.53 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.78140 (10)0.80539 (15)0.01520 (8)0.0622 (5)
N10.6284 (2)0.4424 (4)0.1286 (2)0.0494 (11)
N20.6390 (2)0.6253 (4)0.0489 (2)0.0504 (11)
C10.6113 (3)0.3800 (5)0.0576 (3)0.0485 (14)
C20.5887 (3)0.2349 (5)0.0337 (3)0.0615 (19)
C30.5739 (4)0.2140 (6)−0.0423 (3)0.071 (2)
C40.5800 (4)0.3300 (6)−0.0928 (3)0.0676 (19)
C50.6016 (3)0.4728 (6)−0.0695 (3)0.0598 (17)
C60.6175 (3)0.4968 (5)0.0065 (3)0.0479 (14)
C70.6444 (3)0.5879 (5)0.1201 (3)0.0550 (17)
C80.6288 (3)0.3604 (6)0.1995 (3)0.0611 (17)
C90.7112 (3)0.3908 (4)0.2537 (2)0.092 (3)
C100.7978 (3)0.3669 (4)0.2238 (2)0.0805 (14)
C110.8658 (3)0.4673 (4)0.2459 (2)0.0805 (14)
C120.9508 (5)0.4492 (9)0.2211 (5)0.103 (3)
C130.9606 (5)0.3318 (9)0.1751 (5)0.104 (3)
C140.8930 (5)0.2323 (9)0.1538 (5)0.105 (3)
C150.8145 (5)0.2532 (7)0.1779 (3)0.0805 (14)
C160.6585 (3)0.7756 (5)0.0205 (3)0.0600 (16)
C170.8383 (5)0.8082 (7)0.1119 (3)0.088 (3)
C180.7921 (2)0.9879 (4)−0.03326 (19)0.090 (3)
C190.8198 (2)0.6457 (4)−0.03916 (19)0.0629 (17)
C200.7951 (2)0.6338 (4)−0.11654 (19)0.073 (2)
C210.8174 (4)0.5106 (8)−0.1566 (4)0.087 (3)
C220.8647 (5)0.3947 (8)−0.1216 (4)0.093 (3)
C230.8905 (5)0.4028 (7)−0.0465 (5)0.102 (3)
C240.8673 (4)0.5258 (7)−0.0051 (4)0.085 (3)
Br10.59570 (4)0.93585 (6)0.20869 (3)0.0720 (2)
OW10.5856 (3)0.6540 (5)0.3323 (3)0.0960 (19)
H20.583900.156700.067400.0740*
H30.559300.11850−0.060600.0850*
H40.569000.31030−0.143800.0810*
H50.605500.55040−0.103700.0720*
H70.657600.654800.159500.0660*
H8A0.625000.253600.189000.0740*
H8B0.576700.388600.223200.0740*
H9A0.708800.493900.270700.1100*
H9B0.709100.326800.297200.1100*
H110.855500.547100.277200.0970*
H120.997200.514500.235800.1230*
H131.015100.317500.157100.1240*
H140.902400.151500.122800.1260*
H150.769000.186600.162500.0970*
H16A0.637200.851000.053200.0720*
H16B0.626900.78870−0.029000.0720*
H17A0.817200.891800.138700.1320*
H17B0.901000.817900.110100.1320*
H17C0.826100.716500.136900.1320*
H18A0.771501.06730−0.003400.1350*
H18B0.757100.98570−0.081200.1350*
H18C0.853101.00490−0.040300.1350*
H200.762900.71120−0.141300.0870*
H210.800200.50590−0.207900.1050*
H220.879200.31120−0.148900.1110*
H230.923800.32550−0.022800.1230*
H240.883700.528000.046400.1030*
HW10.589 (5)0.705 (8)0.294 (3)0.1450*
HW20.542 (4)0.598 (8)0.325 (4)0.1450*
U11U22U33U12U13U23
Si10.0692 (9)0.0560 (7)0.0610 (9)−0.0105 (7)0.0047 (7)0.0011 (6)
N10.052 (2)0.0482 (18)0.049 (2)0.0002 (17)0.0098 (16)−0.0020 (17)
N20.051 (2)0.0471 (18)0.054 (2)0.0046 (16)0.0102 (18)0.0005 (17)
C10.038 (2)0.055 (2)0.053 (3)0.0007 (18)0.007 (2)−0.005 (2)
C20.058 (3)0.053 (3)0.074 (4)−0.003 (2)0.010 (3)−0.004 (2)
C30.074 (4)0.064 (3)0.074 (4)−0.009 (3)0.004 (3)−0.021 (3)
C40.067 (3)0.082 (4)0.054 (3)−0.003 (3)0.007 (3)−0.015 (3)
C50.056 (3)0.069 (3)0.055 (3)0.002 (2)0.009 (2)0.004 (2)
C60.037 (2)0.055 (2)0.052 (3)0.0032 (19)0.0064 (19)−0.003 (2)
C70.059 (3)0.048 (3)0.059 (3)0.001 (2)0.011 (2)−0.007 (2)
C80.064 (3)0.067 (3)0.054 (3)−0.010 (2)0.014 (2)0.001 (2)
C90.100 (5)0.103 (5)0.073 (4)0.004 (4)0.014 (4)0.014 (3)
C100.088 (3)0.081 (2)0.070 (2)−0.0050 (18)−0.0026 (19)0.0080 (16)
C110.088 (3)0.081 (2)0.070 (2)−0.0050 (18)−0.0026 (19)0.0080 (16)
C120.074 (5)0.111 (6)0.122 (6)−0.013 (4)0.005 (4)0.024 (5)
C130.070 (4)0.119 (6)0.120 (6)−0.014 (4)0.003 (4)0.017 (5)
C140.095 (5)0.107 (5)0.116 (6)−0.003 (4)0.020 (4)0.015 (4)
C150.088 (3)0.081 (2)0.070 (2)−0.0050 (18)−0.0026 (19)0.0080 (16)
C160.074 (3)0.046 (2)0.061 (3)0.004 (2)0.012 (3)0.002 (2)
C170.098 (5)0.087 (4)0.076 (4)−0.004 (3)−0.010 (3)−0.011 (3)
C180.112 (5)0.068 (3)0.092 (5)−0.018 (3)0.019 (4)0.015 (3)
C190.054 (3)0.069 (3)0.065 (3)−0.017 (2)0.004 (2)0.002 (3)
C200.062 (4)0.086 (4)0.071 (4)−0.004 (3)0.012 (3)0.000 (3)
C210.072 (4)0.114 (5)0.077 (4)−0.008 (4)0.012 (3)−0.018 (4)
C220.081 (5)0.093 (4)0.105 (6)−0.011 (4)0.016 (4)−0.031 (4)
C230.110 (6)0.080 (4)0.114 (6)0.012 (4)−0.001 (5)−0.010 (4)
C240.101 (5)0.076 (4)0.075 (4)0.004 (3)−0.007 (3)−0.005 (3)
Br10.0904 (4)0.0581 (3)0.0677 (4)−0.0022 (3)0.0101 (3)−0.0092 (3)
OW10.100 (4)0.092 (3)0.092 (3)−0.004 (2)−0.008 (3)0.005 (2)
Si1—C161.896 (5)C22—C231.364 (11)
Si1—C171.853 (6)C23—C241.391 (10)
Si1—C181.859 (4)C2—H20.9300
Si1—C191.854 (4)C3—H30.9300
OW1—HW10.83 (6)C4—H40.9300
OW1—HW20.83 (6)C5—H50.9300
N1—C81.467 (6)C7—H70.9300
N1—C11.388 (6)C8—H8B0.9700
N1—C71.331 (6)C8—H8A0.9700
N2—C61.394 (6)C9—H9B0.9700
N2—C71.314 (6)C9—H9A0.9700
N2—C161.474 (6)C11—H110.9300
C1—C21.393 (6)C12—H120.9300
C1—C61.397 (7)C13—H130.9300
C2—C31.371 (8)C14—H140.9300
C3—C41.384 (8)C15—H150.9300
C4—C51.368 (8)C16—H16B0.9700
C5—C61.376 (8)C16—H16A0.9700
C8—C91.523 (6)C17—H17A0.9600
C9—C101.488 (6)C17—H17B0.9600
C10—C111.391 (6)C17—H17C0.9600
C10—C151.347 (7)C18—H18A0.9600
C11—C121.419 (9)C18—H18C0.9600
C12—C131.351 (12)C18—H18B0.9600
C13—C141.378 (11)C20—H200.9300
C14—C151.324 (11)C21—H210.9300
C19—C241.392 (7)C22—H220.9300
C19—C201.402 (5)C23—H230.9300
C20—C211.374 (8)C24—H240.9300
C21—C221.370 (10)
C16—Si1—C17108.4 (3)C6—C5—H5121.00
C16—Si1—C18106.39 (18)N2—C7—H7124.00
C16—Si1—C19106.61 (19)N1—C7—H7124.00
C17—Si1—C18111.8 (2)N1—C8—H8A109.00
C17—Si1—C19111.2 (2)C9—C8—H8A109.00
C18—Si1—C19112.12 (17)C9—C8—H8B109.00
HW1—OW1—HW2109 (7)H8A—C8—H8B108.00
C1—N1—C8125.4 (4)N1—C8—H8B109.00
C7—N1—C8127.0 (4)C8—C9—H9A108.00
C1—N1—C7107.7 (4)C10—C9—H9A108.00
C6—N2—C7108.0 (4)C10—C9—H9B108.00
C6—N2—C16127.0 (4)C8—C9—H9B108.00
C7—N2—C16124.9 (4)H9A—C9—H9B107.00
N1—C1—C2132.0 (5)C12—C11—H11120.00
N1—C1—C6106.6 (4)C10—C11—H11120.00
C2—C1—C6121.4 (5)C11—C12—H12122.00
C1—C2—C3116.1 (5)C13—C12—H12122.00
C2—C3—C4122.3 (5)C12—C13—H13119.00
C3—C4—C5121.7 (5)C14—C13—H13119.00
C4—C5—C6117.3 (5)C15—C14—H14120.00
N2—C6—C1106.4 (4)C13—C14—H14120.00
N2—C6—C5132.4 (4)C14—C15—H15119.00
C1—C6—C5121.2 (4)C10—C15—H15119.00
N1—C7—N2111.4 (4)Si1—C16—H16A109.00
N1—C8—C9113.0 (4)Si1—C16—H16B109.00
C8—C9—C10116.1 (3)N2—C16—H16B109.00
C9—C10—C11117.5 (3)H16A—C16—H16B108.00
C11—C10—C15118.4 (5)N2—C16—H16A109.00
C9—C10—C15124.1 (5)Si1—C17—H17B109.00
C10—C11—C12120.6 (5)Si1—C17—H17C109.00
C11—C12—C13116.4 (7)H17A—C17—H17B109.00
C12—C13—C14122.7 (7)H17A—C17—H17C110.00
C13—C14—C15119.2 (7)H17B—C17—H17C110.00
C10—C15—C14122.8 (7)Si1—C17—H17A109.00
Si1—C16—N2112.3 (3)Si1—C18—H18A109.00
Si1—C19—C20120.9 (3)Si1—C18—H18C110.00
Si1—C19—C24122.4 (4)H18A—C18—H18B109.00
C20—C19—C24116.5 (4)H18A—C18—H18C110.00
C19—C20—C21121.6 (4)H18B—C18—H18C109.00
C20—C21—C22120.6 (6)Si1—C18—H18B109.00
C21—C22—C23119.5 (7)C21—C20—H20119.00
C22—C23—C24120.5 (7)C19—C20—H20119.00
C19—C24—C23121.3 (6)C20—C21—H21120.00
C1—C2—H2122.00C22—C21—H21120.00
C3—C2—H2122.00C23—C22—H22120.00
C2—C3—H3119.00C21—C22—H22120.00
C4—C3—H3119.00C22—C23—H23120.00
C5—C4—H4119.00C24—C23—H23120.00
C3—C4—H4119.00C19—C24—H24119.00
C4—C5—H5121.00C23—C24—H24119.00
C18—Si1—C19—C24140.9 (4)C2—C1—C6—C5−0.1 (7)
C17—Si1—C19—C20−170.9 (3)C2—C1—C6—N2178.6 (4)
C17—Si1—C16—N2−67.2 (4)N1—C1—C6—C5−178.2 (4)
C16—Si1—C19—C2071.1 (3)C1—C2—C3—C4−0.7 (8)
C19—Si1—C16—N252.7 (4)C2—C3—C4—C50.2 (9)
C17—Si1—C19—C2415.0 (5)C3—C4—C5—C60.3 (8)
C18—Si1—C16—N2172.5 (3)C4—C5—C6—N2−178.7 (5)
C16—Si1—C19—C24−103.0 (4)C4—C5—C6—C1−0.3 (7)
C18—Si1—C19—C20−44.9 (3)N1—C8—C9—C10−53.3 (5)
C7—N1—C1—C6−0.4 (5)C8—C9—C10—C11141.8 (4)
C8—N1—C1—C22.1 (7)C8—C9—C10—C15−39.3 (6)
C1—N1—C8—C9130.7 (4)C11—C10—C15—C140.8 (8)
C7—N1—C8—C9−49.0 (6)C9—C10—C11—C12178.4 (5)
C8—N1—C1—C6179.9 (4)C15—C10—C11—C12−0.6 (7)
C1—N1—C7—N20.0 (5)C9—C10—C15—C14−178.1 (6)
C7—N1—C1—C2−178.2 (5)C10—C11—C12—C130.7 (10)
C8—N1—C7—N2179.8 (4)C11—C12—C13—C14−1.1 (12)
C16—N2—C6—C1175.7 (4)C12—C13—C14—C151.3 (13)
C16—N2—C6—C5−5.8 (8)C13—C14—C15—C10−1.2 (11)
C16—N2—C7—N1−176.0 (4)Si1—C19—C20—C21−175.0 (4)
C7—N2—C6—C5178.0 (5)C24—C19—C20—C21−0.5 (6)
C6—N2—C7—N10.3 (5)Si1—C19—C24—C23175.9 (5)
C7—N2—C6—C1−0.5 (5)C20—C19—C24—C231.5 (8)
C6—N2—C16—Si1−92.5 (5)C19—C20—C21—C220.2 (8)
C7—N2—C16—Si183.1 (5)C20—C21—C22—C23−0.7 (10)
N1—C1—C2—C3178.1 (5)C21—C22—C23—C241.6 (11)
C6—C1—C2—C30.6 (7)C22—C23—C24—C19−2.0 (10)
N1—C1—C6—N20.5 (5)
D—H···AD—HH···AD···AD—H···A
OW1—HW1···Br10.83 (6)2.57 (7)3.365 (5)160 (6)
OW1—HW2···Br1i0.83 (6)2.56 (7)3.384 (5)175 (6)
C7—H7···Br10.932.853.597 (5)138
C8—H8A···Br1ii0.972.893.822 (5)160
C16—H16B···OW1iii0.972.553.494 (7)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW1—HW1⋯Br10.83 (6)2.57 (7)3.365 (5)160 (6)
OW1—HW2⋯Br1i 0.83 (6)2.56 (7)3.384 (5)175 (6)
C7—H7⋯Br10.932.853.597 (5)138
C8—H8A⋯Br1ii 0.972.893.822 (5)160
C16—H16B⋯OW1iii 0.972.553.494 (7)164

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  A Tavman; S Birteksöz; G Otük
Journal:  Folia Microbiol (Praha)       Date:  2005       Impact factor: 2.629

7.  1-(Prop-2-en-1-yl)-3-[(trimethyl-sil-yl)meth-yl]benzimidazolium bromide monohydrate.

Authors:  Zeliha Baktır; Mehmet Akkurt; Nihat Sireci; Hasan Küçükbay
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

8.  1-Benzyl-3-[(trimethyl-sil-yl)meth-yl]benzimidazolium chloride monohydrate.

Authors:  Mehmet Akkurt; Ismail Celik; Hasan Küçükbay; Nihat Sireci; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  8 in total
  2 in total

1.  Crystal structure of 1,3-bis-(4-methyl-benz-yl)-1H-1,3-benzimidazol-3-ium bromide monohydrate.

Authors:  Sevim Türktekin Çelikesir; Ömer Çelik; Senem Akkoç; İlhan Özer İlhan; Yetkin Gök; Mehmet Akkurt
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

2.  Aminosilanes derived from 1H-benzimidazole-2(3H)-thione.

Authors:  Juliana Palomo-Molina; Efrén V García-Báez; Rosalinda Contreras; Kayim Pineda-Urbina; Angel Ramos-Organillo
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-08-12       Impact factor: 1.172

  2 in total

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