Literature DB >> 21588727

1-(Prop-2-en-1-yl)-3-[(trimethyl-sil-yl)meth-yl]benzimidazolium bromide monohydrate.

Zeliha Baktır, Mehmet Akkurt, Nihat Sireci, Hasan Küçükbay.   

Abstract

In the title compound, C(14)H(21)N(2)Si(+)·Br(-)·H(2)O, the benzimidazole ring system is almost planar [maximum deviation = 0.021 (2) Å]. In the crystal, O-H⋯Br and C-H⋯O hydrogen bonds link the ions via the O atoms of the water mol-ecules. In addition, there are π-π stacking inter-actions between the centroids of the benzene and imidazole rings of the benzimidazole ring system [centroid-centroid distances = 3.521 (3) and 3.575 (2) Å].

Entities:  

Year:  2010        PMID: 21588727      PMCID: PMC3008061          DOI: 10.1107/S1600536810033015

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­tumour activity of alkyl­silyl-substituted benzimidazole derivatives, see: Kleemann et al. (2009 ▶); Lukevics et al. (2001 ▶); Ignatovich et al. (2010 ▶). For the pharmacological activity of benzimidazole compounds, see: Singh & Lown (2000 ▶); Huang et al. (2006 ▶); Turner & Denny (1996 ▶); Galal et al. (2009 ▶); Küçükbay et al. (2003 ▶, 2004 ▶, 2009 ▶, 2010a ▶,b ▶); Şireci et al. (2010 ▶); Yılmaz & Küçükbay (2009 ▶); Yılmaz et al. (2010 ▶). For the structures of similar benzimidazole derivatives, see: Akkurt et al. (2008 ▶, 2010a ▶,b ▶); Yıldırım et al. (2006 ▶). For π–π inter­actions, see: Janiak (2000 ▶).

Experimental

Crystal data

C14H21N2Si+·Br−·H2O M = 343.33 Triclinic, a = 8.9063 (2) Å b = 10.4720 (2) Å c = 10.9439 (3) Å α = 66.542 (4)° β = 71.479 (4)° γ = 80.625 (5)° V = 887.07 (5) Å3 Z = 2 Mo Kα radiation μ = 2.38 mm−1 T = 294 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.647, T max = 0.647 18957 measured reflections 3618 independent reflections 2202 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.121 S = 1.02 3618 reflections 175 parameters 3 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033015/dn2597sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033015/dn2597Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H21N2Si+·Br·H2OZ = 2
Mr = 343.33F(000) = 356
Triclinic, P1Dx = 1.285 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9063 (2) ÅCell parameters from 3185 reflections
b = 10.4720 (2) Åθ = 2.4–26.4°
c = 10.9439 (3) ŵ = 2.38 mm1
α = 66.542 (4)°T = 294 K
β = 71.479 (4)°Block, white
γ = 80.625 (5)°0.20 × 0.20 × 0.20 mm
V = 887.07 (5) Å3
Rigaku R-AXIS RAPID-S diffractometer3618 independent reflections
Radiation source: Sealed Tube2202 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.073
Detector resolution: 10.0000 pixels mm-1θmax = 26.4°, θmin = 2.4°
dtprofit.ref scansh = −11→9
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −13→13
Tmin = 0.647, Tmax = 0.647l = −13→13
18957 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0356P)2 + 0.3659P] where P = (Fo2 + 2Fc2)/3
3618 reflections(Δ/σ)max = 0.006
175 parametersΔρmax = 0.30 e Å3
3 restraintsΔρmin = −0.35 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.53721 (14)0.18235 (12)0.70600 (11)0.0684 (3)
N10.6155 (3)0.3381 (3)0.8362 (3)0.0570 (7)
N20.7515 (3)0.3069 (3)0.9818 (3)0.0624 (8)
C10.5921 (4)0.3128 (4)1.0536 (4)0.0562 (9)
C20.5185 (5)0.3059 (4)1.1879 (4)0.0669 (10)
H20.57600.29271.24990.080*
C30.3555 (5)0.3197 (4)1.2249 (4)0.0722 (11)
H30.30160.31431.31470.087*
C40.2689 (5)0.3415 (4)1.1314 (4)0.0673 (10)
H40.15900.35091.16040.081*
C50.3419 (4)0.3495 (4)0.9978 (4)0.0625 (9)
H50.28440.36490.93530.075*
C60.5059 (4)0.3332 (4)0.9609 (3)0.0546 (8)
C70.7597 (4)0.3221 (4)0.8533 (4)0.0634 (10)
H70.85350.32160.78460.076*
C80.5773 (5)0.3529 (4)0.7092 (3)0.0634 (10)
H8A0.66490.39540.62940.076*
H8B0.48470.41530.70070.076*
C90.7201 (6)0.0716 (5)0.7079 (6)0.1093 (17)
H9A0.7050−0.01360.70070.164*
H9B0.74530.05080.79310.164*
H9C0.80550.11970.63100.164*
C100.4835 (6)0.2278 (6)0.5440 (5)0.1070 (17)
H10A0.38680.28400.54720.160*
H10B0.46900.14420.53370.160*
H10C0.56660.27900.46670.160*
C110.3721 (6)0.0963 (5)0.8586 (5)0.1049 (16)
H11A0.36720.00220.86680.157*
H11B0.27410.14630.84700.157*
H11C0.38970.09580.94090.157*
C120.8871 (5)0.2883 (5)1.0387 (4)0.0781 (12)
H12A0.87010.34881.09020.094*
H12B0.98310.31520.96290.094*
C130.9078 (5)0.1417 (5)1.1316 (6)0.0889 (14)
H130.93010.07311.09370.107*
C140.8967 (6)0.1037 (6)1.2611 (7)0.1190 (19)
H14A0.87440.16981.30210.143*
H14B0.91090.01011.31390.143*
O1W1.0389 (5)0.3039 (4)0.5704 (4)0.1283 (12)
H1W1.01040.34350.49620.192*
H2W1.09690.35730.57610.192*
Br10.85464 (5)0.48204 (5)0.31301 (5)0.0895 (2)
U11U22U33U12U13U23
Si10.0770 (8)0.0756 (7)0.0588 (6)−0.0017 (6)−0.0259 (6)−0.0264 (6)
N10.0539 (18)0.067 (2)0.0517 (17)−0.0005 (14)−0.0141 (14)−0.0253 (15)
N20.0522 (18)0.076 (2)0.065 (2)−0.0021 (15)−0.0165 (15)−0.0321 (17)
C10.052 (2)0.064 (2)0.055 (2)−0.0033 (17)−0.0155 (17)−0.0241 (18)
C20.071 (3)0.080 (3)0.055 (2)−0.005 (2)−0.018 (2)−0.029 (2)
C30.072 (3)0.082 (3)0.059 (2)−0.007 (2)−0.005 (2)−0.030 (2)
C40.054 (2)0.073 (3)0.072 (3)−0.0029 (19)−0.008 (2)−0.031 (2)
C50.055 (2)0.066 (2)0.066 (2)0.0009 (18)−0.0174 (19)−0.0259 (19)
C60.052 (2)0.061 (2)0.053 (2)−0.0012 (16)−0.0122 (17)−0.0258 (17)
C70.053 (2)0.076 (3)0.062 (2)−0.0019 (18)−0.0085 (18)−0.032 (2)
C80.069 (2)0.072 (3)0.045 (2)−0.0009 (19)−0.0158 (18)−0.0188 (18)
C90.107 (4)0.087 (3)0.137 (5)0.015 (3)−0.043 (3)−0.044 (3)
C100.121 (4)0.144 (5)0.079 (3)−0.010 (3)−0.041 (3)−0.053 (3)
C110.120 (4)0.103 (4)0.090 (3)−0.039 (3)−0.011 (3)−0.035 (3)
C120.056 (2)0.107 (4)0.085 (3)−0.005 (2)−0.027 (2)−0.042 (3)
C130.067 (3)0.099 (4)0.115 (4)0.009 (2)−0.044 (3)−0.044 (3)
C140.098 (4)0.117 (5)0.130 (5)0.009 (3)−0.055 (4)−0.022 (4)
O1W0.124 (3)0.130 (3)0.132 (3)−0.002 (2)−0.047 (2)−0.042 (2)
Br10.0699 (3)0.1215 (4)0.0769 (3)0.0007 (3)−0.0195 (2)−0.0391 (3)
Si1—C91.840 (5)C8—H8A0.9700
Si1—C101.842 (4)C8—H8B0.9700
Si1—C111.854 (5)C9—H9A0.9600
Si1—C81.893 (4)C9—H9B0.9600
N1—C71.329 (4)C9—H9C0.9600
N1—C61.390 (4)C10—H10A0.9600
N1—C81.478 (4)C10—H10B0.9600
N2—C71.330 (4)C10—H10C0.9600
N2—C11.392 (4)C11—H11A0.9600
N2—C121.480 (5)C11—H11B0.9600
C1—C21.383 (5)C11—H11C0.9600
C1—C61.390 (5)C12—C131.486 (6)
C2—C31.377 (5)C12—H12A0.9700
C2—H20.9300C12—H12B0.9700
C3—C41.397 (5)C13—C141.285 (7)
C3—H30.9300C13—H130.9300
C4—C51.372 (5)C14—H14A0.9300
C4—H40.9300C14—H14B0.9300
C5—C61.387 (5)O1W—H1W0.8512
C5—H50.9300O1W—H2W0.8513
C7—H70.9300
C9—Si1—C10111.7 (2)Si1—C8—H8A108.8
C9—Si1—C11110.6 (2)N1—C8—H8B108.8
C10—Si1—C11110.6 (2)Si1—C8—H8B108.8
C9—Si1—C8107.8 (2)H8A—C8—H8B107.7
C10—Si1—C8105.9 (2)Si1—C9—H9A109.5
C11—Si1—C8110.15 (19)Si1—C9—H9B109.5
C7—N1—C6108.0 (3)H9A—C9—H9B109.5
C7—N1—C8126.3 (3)Si1—C9—H9C109.5
C6—N1—C8125.7 (3)H9A—C9—H9C109.5
C7—N2—C1107.9 (3)H9B—C9—H9C109.5
C7—N2—C12126.3 (3)Si1—C10—H10A109.5
C1—N2—C12125.8 (3)Si1—C10—H10B109.5
C2—C1—C6121.7 (3)H10A—C10—H10B109.5
C2—C1—N2131.6 (3)Si1—C10—H10C109.5
C6—C1—N2106.7 (3)H10A—C10—H10C109.5
C3—C2—C1116.5 (3)H10B—C10—H10C109.5
C3—C2—H2121.8Si1—C11—H11A109.5
C1—C2—H2121.8Si1—C11—H11B109.5
C2—C3—C4121.9 (4)H11A—C11—H11B109.5
C2—C3—H3119.0Si1—C11—H11C109.5
C4—C3—H3119.0H11A—C11—H11C109.5
C5—C4—C3121.7 (4)H11B—C11—H11C109.5
C5—C4—H4119.2N2—C12—C13111.7 (3)
C3—C4—H4119.2N2—C12—H12A109.3
C4—C5—C6116.6 (3)C13—C12—H12A109.3
C4—C5—H5121.7N2—C12—H12B109.3
C6—C5—H5121.7C13—C12—H12B109.3
C5—C6—N1131.6 (3)H12A—C12—H12B107.9
C5—C6—C1121.7 (3)C14—C13—C12124.1 (5)
N1—C6—C1106.7 (3)C14—C13—H13118.0
N2—C7—N1110.8 (3)C12—C13—H13118.0
N2—C7—H7124.6C13—C14—H14A120.0
N1—C7—H7124.6C13—C14—H14B120.0
N1—C8—Si1113.9 (2)H14A—C14—H14B120.0
N1—C8—H8A108.8H1W—O1W—H2W109.9
D—H···AD—HH···AD···AD—H···A
C7—H7···O1W0.932.463.351 (5)161.
O1W—H1W···Br10.852.623.445 (4)165.
O1W—H2W···Br1i0.852.593.360 (4)152.
ring 1/ring 2ccdipdsa
Cg1->Cg2ii3.521 (3)3.38615.9
Cg2->Cg2ii3.575 (2)3.39618.2
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O1W0.932.463.351 (5)161
O1W—H1W⋯Br10.852.623.445 (4)165
O1W—H2W⋯Br1i0.852.593.360 (4)152

Symmetry code: (i) .

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8.  1-Benzyl-3-[(trimethyl-sil-yl)meth-yl]benzimidazolium chloride monohydrate.

Authors:  Mehmet Akkurt; Ismail Celik; Hasan Küçükbay; Nihat Sireci; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

9.  1-Cyclo-hexyl-methyl-3-methyl-2-[(phenyl-imino)(sulfido)meth-yl]benzimidazolium.

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