Literature DB >> 25705478

Crystal structure of 1,3-bis-(4-methyl-benz-yl)-1H-1,3-benzimidazol-3-ium bromide monohydrate.

Sevim Türktekin Çelikesir1, Ömer Çelik2, Senem Akkoç3, İlhan Özer İlhan3, Yetkin Gök4, Mehmet Akkurt1.   

Abstract

In the title hydrated symetrically substituted 1,3-bis-(4-methyl-benz-yl)benzimidazolium salt, C23H23N2 (+)·Br(-)·H2O, the dihedral angles between the benzimidazole ring system (r.m.s. deviation = 0.003 Å) and the pendant benzene rings are 73.18 (16) and 77.52 (16)°. Both benzene rings lie to the same side of the benzimidazole ring system, giving the cation an overall U-shape. In the crystal, the cation is linked to the water mol-ecule by a short C-H⋯O hydrogen bond and the water mol-ecule forms O-H⋯Br hydrogen bonds. Together, these inter-actions lead to [010] chains. The packing is consolidated by C-H⋯Br hydrogen bonds and aromatic π-π stacking inter-actions [centroid-centroid distances = 3.5401 (17) and 3.8815 (18) Å], generating a three-dimensional network.

Entities:  

Keywords:  1,3-bis­(4-methyl­benz­yl)-1H-3,1-benzimidazol-3-ium bromide monohydrate; N-heterocyclic carbenes; aromatic π–π stacking inter­actions; benzimidazolium salts; crystal structure; hydrogen bonds

Year:  2015        PMID: 25705478      PMCID: PMC4331869          DOI: 10.1107/S2056989014025857

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background to N-heterocyclic carbenes (NHCs), which have been frequently used as ligands in organometallic and coordination chemistry, see: Arduengo et al. (1991 ▸); Akkoç & Gök (2013 ▸); Akkoç et al. (2014 ▸); Berding et al. (2009 ▸); Gök et al. (2014 ▸). For related structures, see: Akkurt et al. (2011 ▸, 2012 ▸).

Experimental

Crystal data

C23H23N2Br−·H2O M = 425.35 Triclinic, a = 9.3846 (3) Å b = 9.7174 (3) Å c = 12.5603 (4) Å α = 76.405 (2)° β = 84.739 (2)° γ = 72.696 (2)° V = 1062.65 (6) Å3 Z = 2 Mo Kα radiation μ = 1.95 mm−1 T = 296 K 0.15 × 0.10 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer 22302 measured reflections 4342 independent reflections 3144 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.135 S = 1.06 4342 reflections 252 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.15 e Å−3 Δρmin = −0.49 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014025857/hb7325sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014025857/hb7325Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014025857/hb7325Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014025857/hb7325fig1.tif Perspective view of the mol­ecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989014025857/hb7325fig2.tif View of the hydrogen bonding and mol­ecular packing of the title compound along a axis. Only H atoms involved in H bonding are shown. CCDC reference: 1036037 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H23N2+·Br·H2OZ = 2
Mr = 425.35F(000) = 440
Triclinic, P1Dx = 1.329 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3846 (3) ÅCell parameters from 7459 reflections
b = 9.7174 (3) Åθ = 2.3–27.0°
c = 12.5603 (4) ŵ = 1.95 mm1
α = 76.405 (2)°T = 296 K
β = 84.739 (2)°Plane, colourless
γ = 72.696 (2)°0.15 × 0.10 × 0.06 mm
V = 1062.65 (6) Å3
Bruker APEXII CCD diffractometer3144 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.035
Graphite monochromatorθmax = 26.4°, θmin = 1.7°
φ and ω scansh = −11→11
22302 measured reflectionsk = −12→12
4342 independent reflectionsl = −15→15
Refinement on F22 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.048w = 1/[σ2(Fo2) + (0.0735P)2 + 0.2354P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.135(Δ/σ)max < 0.001
S = 1.06Δρmax = 1.15 e Å3
4342 reflectionsΔρmin = −0.49 e Å3
252 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.15363 (4)0.70096 (4)0.47065 (3)0.0746 (2)
N10.2897 (3)0.1364 (3)0.36229 (18)0.0512 (8)
N20.4267 (3)0.2795 (2)0.37164 (18)0.0501 (8)
C10.5241 (3)0.1441 (3)0.3623 (2)0.0474 (8)
C20.6799 (4)0.0955 (4)0.3603 (3)0.0597 (11)
C30.7420 (4)−0.0495 (4)0.3526 (3)0.0730 (12)
C40.6544 (4)−0.1407 (4)0.3469 (3)0.0714 (13)
C50.5022 (4)−0.0930 (3)0.3487 (2)0.0601 (10)
C60.4383 (3)0.0537 (3)0.3562 (2)0.0484 (9)
C70.2888 (3)0.2699 (3)0.3712 (2)0.0532 (9)
C80.4673 (4)0.4144 (3)0.3749 (3)0.0599 (11)
C90.4849 (3)0.5039 (3)0.2621 (3)0.0543 (10)
C100.3662 (4)0.5668 (4)0.1937 (3)0.0768 (14)
C110.3829 (5)0.6477 (4)0.0897 (3)0.0781 (12)
C120.5159 (5)0.6716 (4)0.0512 (3)0.0731 (14)
C130.6324 (5)0.6105 (6)0.1209 (4)0.0969 (17)
C140.6195 (4)0.5281 (5)0.2240 (4)0.0828 (16)
C150.5316 (6)0.7626 (6)−0.0641 (4)0.1146 (19)
C160.1558 (4)0.0910 (4)0.3505 (3)0.0629 (11)
C170.1196 (3)0.1227 (3)0.2314 (3)0.0552 (10)
C180.1778 (4)0.0197 (4)0.1693 (3)0.0744 (14)
C190.1519 (5)0.0524 (5)0.0591 (3)0.0863 (17)
C200.0658 (4)0.1912 (5)0.0063 (3)0.0724 (14)
C210.0054 (5)0.2899 (4)0.0696 (3)0.0795 (16)
C220.0303 (4)0.2586 (4)0.1806 (3)0.0724 (12)
C230.0438 (6)0.2267 (7)−0.1146 (3)0.110 (2)
O1−0.0190 (4)0.5308 (3)0.3474 (2)0.0850 (11)
H20.737900.156900.364000.0720*
H30.84540−0.087500.351100.0880*
H40.70140−0.237800.341600.0850*
H50.44440−0.154600.345300.0720*
H70.202900.346600.376300.0640*
H8A0.560200.386600.413300.0720*
H8B0.390500.474400.415400.0720*
H100.273000.554800.217800.0920*
H110.300800.687100.044500.0940*
H130.724600.625600.097500.1160*
H140.702300.488100.268500.0990*
H15A0.498500.86580−0.063100.1710*
H15B0.471900.74250−0.113400.1710*
H15C0.634300.73670−0.088000.1710*
H16A0.071800.144400.389800.0760*
H16B0.17390−0.013800.381800.0760*
H180.23590−0.073900.202200.0890*
H190.19270−0.019600.018800.1030*
H21−0.055400.382500.037300.0950*
H22−0.013300.329700.221300.0870*
H23A−0.022200.17570−0.130600.1660*
H23B0.138400.19600−0.151400.1660*
H23C0.001200.33120−0.139500.1660*
H1W−0.069 (5)0.490 (6)0.395 (4)0.1280*
H2W0.017 (6)0.582 (5)0.374 (4)0.1280*
U11U22U33U12U13U23
Br10.0632 (3)0.0626 (2)0.1010 (3)−0.0181 (2)0.0024 (2)−0.0249 (2)
N10.0516 (14)0.0507 (14)0.0456 (13)−0.0114 (11)0.0027 (10)−0.0053 (11)
N20.0516 (14)0.0446 (13)0.0468 (13)−0.0021 (11)−0.0055 (10)−0.0095 (10)
C10.0533 (16)0.0431 (14)0.0398 (14)−0.0032 (13)−0.0048 (12)−0.0097 (12)
C20.0523 (18)0.0612 (19)0.0595 (18)−0.0036 (15)−0.0088 (14)−0.0147 (15)
C30.057 (2)0.075 (2)0.072 (2)0.0122 (18)−0.0080 (16)−0.0248 (18)
C40.082 (3)0.0510 (18)0.067 (2)0.0066 (18)−0.0042 (18)−0.0176 (16)
C50.076 (2)0.0452 (16)0.0528 (18)−0.0091 (15)−0.0026 (15)−0.0087 (13)
C60.0527 (16)0.0470 (15)0.0345 (14)−0.0045 (13)0.0010 (12)−0.0009 (12)
C70.0515 (17)0.0480 (16)0.0491 (16)−0.0014 (13)0.0014 (13)−0.0071 (13)
C80.0619 (19)0.0480 (16)0.069 (2)−0.0058 (14)−0.0113 (15)−0.0205 (15)
C90.0537 (17)0.0420 (15)0.069 (2)−0.0103 (13)−0.0042 (14)−0.0187 (14)
C100.0524 (19)0.074 (2)0.089 (3)−0.0164 (17)−0.0051 (17)0.010 (2)
C110.073 (2)0.074 (2)0.079 (2)−0.0242 (19)−0.0078 (19)0.006 (2)
C120.079 (3)0.058 (2)0.083 (2)−0.0247 (18)0.017 (2)−0.0174 (18)
C130.072 (3)0.115 (3)0.111 (3)−0.051 (3)0.018 (2)−0.015 (3)
C140.057 (2)0.092 (3)0.103 (3)−0.027 (2)−0.012 (2)−0.017 (2)
C150.140 (4)0.101 (3)0.096 (3)−0.049 (3)0.037 (3)−0.005 (3)
C160.0608 (19)0.066 (2)0.060 (2)−0.0262 (16)0.0099 (15)−0.0038 (16)
C170.0481 (16)0.0573 (18)0.0625 (19)−0.0224 (14)0.0055 (14)−0.0104 (15)
C180.080 (2)0.060 (2)0.081 (3)−0.0076 (18)−0.0144 (19)−0.0222 (18)
C190.086 (3)0.095 (3)0.085 (3)−0.017 (2)−0.001 (2)−0.045 (2)
C200.068 (2)0.092 (3)0.065 (2)−0.039 (2)−0.0019 (17)−0.011 (2)
C210.084 (3)0.067 (2)0.081 (3)−0.020 (2)−0.017 (2)0.000 (2)
C220.073 (2)0.064 (2)0.074 (2)−0.0070 (18)−0.0038 (18)−0.0185 (18)
C230.112 (4)0.165 (5)0.069 (3)−0.072 (3)−0.004 (2)−0.012 (3)
O10.102 (2)0.0815 (19)0.0707 (17)−0.0267 (15)−0.0048 (14)−0.0135 (14)
N1—C61.393 (4)C21—C221.382 (5)
N1—C71.326 (4)C2—H20.9300
N1—C161.480 (5)C3—H30.9300
N2—C11.385 (4)C4—H40.9300
N2—C71.326 (4)C5—H50.9300
N2—C81.480 (4)C7—H70.9300
C1—C21.396 (5)C8—H8A0.9700
C1—C61.375 (4)C8—H8B0.9700
C2—C31.378 (5)C10—H100.9300
C3—C41.393 (5)C11—H110.9300
C4—C51.364 (5)C13—H130.9300
C5—C61.395 (4)C14—H140.9300
C8—C91.501 (5)C15—H15A0.9600
C9—C101.370 (5)C15—H15B0.9600
C9—C141.376 (5)C15—H15C0.9600
C10—C111.379 (5)C16—H16A0.9700
C11—C121.362 (7)C16—H16B0.9700
C12—C131.364 (7)C18—H180.9300
C12—C151.529 (6)C19—H190.9300
C13—C141.369 (7)C21—H210.9300
C16—C171.504 (5)C22—H220.9300
C17—C181.368 (5)C23—H23A0.9600
C17—C221.377 (5)C23—H23B0.9600
C18—C191.373 (5)C23—H23C0.9600
C19—C201.393 (6)O1—H1W0.83 (5)
C20—C211.351 (6)O1—H2W0.82 (5)
C20—C231.496 (5)
C6—N1—C7107.4 (3)C5—C4—H4119.00
C6—N1—C16127.1 (3)C4—C5—H5122.00
C7—N1—C16125.2 (3)C6—C5—H5122.00
C1—N2—C7107.8 (2)N1—C7—H7125.00
C1—N2—C8126.7 (3)N2—C7—H7125.00
C7—N2—C8125.5 (2)N2—C8—H8A109.00
N2—C1—C2130.8 (3)N2—C8—H8B109.00
N2—C1—C6107.0 (3)C9—C8—H8A109.00
C2—C1—C6122.3 (3)C9—C8—H8B109.00
C1—C2—C3115.6 (3)H8A—C8—H8B108.00
C2—C3—C4121.9 (4)C9—C10—H10120.00
C3—C4—C5122.5 (3)C11—C10—H10120.00
C4—C5—C6116.1 (3)C10—C11—H11119.00
N1—C6—C1106.9 (3)C12—C11—H11119.00
N1—C6—C5131.3 (3)C12—C13—H13119.00
C1—C6—C5121.8 (3)C14—C13—H13119.00
N1—C7—N2110.9 (3)C9—C14—H14120.00
N2—C8—C9112.0 (3)C13—C14—H14120.00
C8—C9—C10121.0 (3)C12—C15—H15A109.00
C8—C9—C14121.6 (3)C12—C15—H15B109.00
C10—C9—C14117.4 (4)C12—C15—H15C109.00
C9—C10—C11120.9 (4)H15A—C15—H15B110.00
C10—C11—C12122.0 (4)H15A—C15—H15C109.00
C11—C12—C13116.4 (4)H15B—C15—H15C110.00
C11—C12—C15121.1 (4)N1—C16—H16A110.00
C13—C12—C15122.5 (4)N1—C16—H16B110.00
C12—C13—C14122.8 (4)C17—C16—H16A110.00
C9—C14—C13120.4 (4)C17—C16—H16B110.00
N1—C16—C17110.1 (3)H16A—C16—H16B108.00
C16—C17—C18121.3 (3)C17—C18—H18120.00
C16—C17—C22120.8 (3)C19—C18—H18119.00
C18—C17—C22117.9 (3)C18—C19—H19119.00
C17—C18—C19121.0 (4)C20—C19—H19119.00
C18—C19—C20121.5 (4)C20—C21—H21119.00
C19—C20—C21116.7 (3)C22—C21—H21119.00
C19—C20—C23120.7 (4)C17—C22—H22120.00
C21—C20—C23122.7 (4)C21—C22—H22120.00
C20—C21—C22122.5 (4)C20—C23—H23A110.00
C17—C22—C21120.4 (3)C20—C23—H23B109.00
C1—C2—H2122.00C20—C23—H23C109.00
C3—C2—H2122.00H23A—C23—H23B109.00
C2—C3—H3119.00H23A—C23—H23C109.00
C4—C3—H3119.00H23B—C23—H23C109.00
C3—C4—H4119.00H1W—O1—H2W109 (5)
C7—N1—C6—C10.2 (3)C4—C5—C6—C1−0.5 (4)
C16—N1—C6—C1174.8 (3)N2—C8—C9—C14−117.1 (4)
C7—N1—C6—C5178.4 (3)N2—C8—C9—C1064.0 (4)
C16—N1—C6—C5−7.0 (5)C8—C9—C14—C13−179.8 (4)
C6—N1—C7—N2−0.2 (3)C8—C9—C10—C11−179.3 (3)
C16—N1—C7—N2−174.9 (3)C14—C9—C10—C111.7 (5)
C6—N1—C16—C17−85.5 (4)C10—C9—C14—C13−0.9 (6)
C7—N1—C16—C1788.2 (3)C9—C10—C11—C12−1.5 (6)
C1—N2—C8—C986.2 (3)C10—C11—C12—C15−179.6 (4)
C7—N2—C8—C9−89.9 (3)C10—C11—C12—C130.3 (6)
C7—N2—C1—C60.1 (3)C11—C12—C13—C140.6 (7)
C8—N2—C1—C6−176.6 (3)C15—C12—C13—C14−179.6 (5)
C7—N2—C1—C2−179.0 (3)C12—C13—C14—C9−0.3 (8)
C8—N2—C1—C24.4 (5)N1—C16—C17—C1890.4 (4)
C1—N2—C7—N10.1 (3)N1—C16—C17—C22−87.5 (4)
C8—N2—C7—N1176.8 (3)C16—C17—C18—C19−175.9 (4)
N2—C1—C2—C3178.5 (3)C22—C17—C18—C192.1 (6)
C2—C1—C6—C50.6 (4)C16—C17—C22—C21175.9 (4)
N2—C1—C6—C5−178.5 (2)C18—C17—C22—C21−2.1 (5)
C6—C1—C2—C3−0.5 (5)C17—C18—C19—C200.1 (7)
C2—C1—C6—N1179.0 (3)C18—C19—C20—C21−2.1 (7)
N2—C1—C6—N1−0.2 (3)C18—C19—C20—C23177.6 (4)
C1—C2—C3—C40.2 (5)C19—C20—C21—C222.0 (7)
C2—C3—C4—C5−0.1 (6)C23—C20—C21—C22−177.6 (4)
C3—C4—C5—C60.2 (5)C20—C21—C22—C170.0 (7)
C4—C5—C6—N1−178.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1W···Br1i0.83 (5)2.47 (5)3.261 (3)162 (5)
O1—H2W···Br10.82 (5)2.51 (5)3.318 (3)171 (4)
C7—H7···O10.932.303.210 (4)166
C8—H8B···Br10.972.793.730 (3)163
C16—H16A···Br1i0.972.913.875 (4)173
C16—H16B···Br1ii0.972.793.741 (4)167
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1WBr1i 0.83(5)2.47(5)3.261(3)162(5)
O1H2WBr10.82(5)2.51(5)3.318(3)171(4)
C7H7O10.932.303.210(4)166
C8H8BBr10.972.793.730(3)163
C16H16ABr1i 0.972.913.875(4)173
C16H16BBr1ii 0.972.793.741(4)167

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,3-Bis(3-phenyl-prop-yl)-1H-1,3-benzimidazole-2(3H)-selone.

Authors:  Mehmet Akkurt; Ulkü Yılmaz; Hasan Küçükbay; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

3.  1-{[Dimeth-yl(phen-yl)sil-yl]meth-yl}-3-(2-phenyl-eth-yl)-1H-benzimidazol-3-ium bromide monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-15

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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