Literature DB >> 21587984

1-Benzyl-3-[(trimethyl-sil-yl)meth-yl]benzimidazolium chloride monohydrate.

Mehmet Akkurt, Ismail Celik, Hasan Küçükbay, Nihat Sireci, Orhan Büyükgüngör.   

Abstract

The title compound, C(18)H(23)N(2)Si(+)·Cl(-)·H(2)O, was synthesized from 1-[(trimethyl-sil-yl)meth-yl]benzimidazole and benzyl chloride in dimethyl-formamide. The benzimidazole ring system is approximately planar, with a maximum deviation of 0.022 (2) Å, and makes an angle of 74.80 (12)° with the phenyl ring. The crystal packing is stabilized by O-H⋯Cl, C-H⋯Cl, C-H⋯O and C-H⋯π inter-actions between symmetry-related mol-ecules together with π-π stacking inter-actions between the imidazolium and benzene rings [centroid-centroid distance = 3.5690 (15) Å] and between the benzene rings [centroid-centroid distance = 3.7223 (14) Å].

Entities:  

Year:  2010        PMID: 21587984      PMCID: PMC3007035          DOI: 10.1107/S1600536810024128

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to benzimidazole compounds and for the biological activity of related structures, see: Galal et al. (2009 ▶); Huang et al. (2006 ▶); Küçükbay & Durmaz (1997 ▶); Küçükbay et al. (1995 ▶, 2003 ▶, 2004 ▶, 2010 ▶); Lukevics et al. (2001 ▶); Singh & Lown (2000 ▶); Tavman et al. (2005 ▶); Turner & Denny (1996 ▶); Williams et al. (2002 ▶); Yılmaz & Küçükbay (2009 ▶); Çetinkaya et al. (1996 ▶). For similar structures, see: Akkurt et al. (2008 ▶, 2010 ▶).

Experimental

Crystal data

C18H23N2Si+·Cl−·H2O M = 348.94 Triclinic, a = 9.3592 (7) Å b = 10.9500 (9) Å c = 11.0522 (8) Å α = 117.594 (6)° β = 103.295 (6)° γ = 92.094 (6)° V = 963.39 (15) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 296 K 0.57 × 0.50 × 0.36 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.859, T max = 0.909 12149 measured reflections 3987 independent reflections 3241 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.135 S = 1.07 3987 reflections 211 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.32 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024128/dn2582sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024128/dn2582Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H23N2Si+·Cl·H2OZ = 2
Mr = 348.94F(000) = 372
Triclinic, P1Dx = 1.203 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3592 (7) ÅCell parameters from 28124 reflections
b = 10.9500 (9) Åθ = 2.1–28.0°
c = 11.0522 (8) ŵ = 0.27 mm1
α = 117.594 (6)°T = 296 K
β = 103.295 (6)°Prism, colourless
γ = 92.094 (6)°0.57 × 0.50 × 0.36 mm
V = 963.39 (15) Å3
Stoe IPDS 2 diffractometer3987 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3241 reflections with I > 2σ(I)
plane graphiteRint = 0.029
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.1°
ω scansh = −11→11
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −13→12
Tmin = 0.859, Tmax = 0.909l = −13→13
12149 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0637P)2 + 0.2683P] where P = (Fo2 + 2Fc2)/3
3987 reflections(Δ/σ)max < 0.001
211 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.53328 (7)0.20172 (7)0.79168 (6)0.05705 (19)
N10.72385 (17)0.36741 (17)0.52896 (17)0.0466 (4)
N20.59349 (17)0.36730 (17)0.66907 (17)0.0466 (4)
C10.4923 (2)0.33506 (19)0.54087 (19)0.0428 (4)
C20.3377 (2)0.3101 (2)0.4971 (2)0.0521 (5)
H20.28160.31040.55660.063*
C30.2721 (2)0.2847 (2)0.3611 (2)0.0587 (5)
H30.16880.26670.32760.070*
C40.3560 (2)0.2853 (3)0.2717 (2)0.0592 (5)
H40.30710.26820.18060.071*
C50.5084 (2)0.3104 (2)0.3150 (2)0.0532 (5)
H50.56410.31110.25550.064*
C60.57570 (19)0.33479 (19)0.4512 (2)0.0432 (4)
C70.7293 (2)0.3855 (2)0.6574 (2)0.0505 (5)
H70.81650.40790.72930.061*
C80.8534 (2)0.3833 (2)0.4794 (2)0.0547 (5)
H8A0.94130.42730.56020.066*
H8B0.83710.44420.43770.066*
C90.8803 (2)0.2461 (2)0.3720 (2)0.0510 (5)
C100.8520 (3)0.2111 (3)0.2308 (3)0.0717 (7)
H100.81710.27410.20140.086*
C110.8748 (3)0.0831 (4)0.1329 (3)0.0935 (10)
H110.85460.06000.03770.112*
C120.9272 (3)−0.0100 (3)0.1753 (4)0.0947 (10)
H120.9404−0.09700.10890.114*
C130.9600 (3)0.0255 (3)0.3158 (4)0.0909 (10)
H130.9980−0.03670.34510.109*
C140.9372 (3)0.1527 (3)0.4141 (3)0.0700 (7)
H140.96020.17600.50950.084*
C150.5549 (3)0.3754 (2)0.7947 (2)0.0549 (5)
H15A0.46250.41220.80030.066*
H15B0.63200.44060.87960.066*
C160.3837 (3)0.0757 (3)0.6328 (3)0.0812 (8)
H16A0.40630.06620.54870.122*
H16B0.29070.10900.63770.122*
H16C0.3767−0.01350.62970.122*
C170.4849 (4)0.2374 (4)0.9569 (3)0.1001 (10)
H17A0.47440.15240.96190.150*
H17B0.39280.27320.95690.150*
H17C0.56240.30501.03760.150*
C180.7121 (3)0.1391 (3)0.7877 (3)0.0899 (9)
H18A0.70280.04780.77960.135*
H18B0.78690.20230.87370.135*
H18C0.74030.13440.70760.135*
O10.9113 (3)0.6314 (2)0.9603 (2)0.1024 (7)
H1A0.99100.60000.94200.154*
H1B0.90900.63501.03800.154*
Cl11.14370 (9)0.44812 (10)0.80296 (8)0.0961 (3)
U11U22U33U12U13U23
Si10.0616 (4)0.0668 (4)0.0477 (3)0.0106 (3)0.0191 (3)0.0301 (3)
N10.0349 (8)0.0565 (9)0.0533 (9)0.0048 (7)0.0145 (7)0.0295 (8)
N20.0448 (9)0.0524 (9)0.0460 (8)0.0074 (7)0.0162 (7)0.0251 (7)
C10.0401 (9)0.0458 (9)0.0466 (9)0.0086 (7)0.0162 (8)0.0238 (8)
C20.0404 (10)0.0611 (12)0.0632 (12)0.0110 (9)0.0240 (9)0.0324 (10)
C30.0358 (10)0.0717 (14)0.0673 (13)0.0081 (9)0.0120 (9)0.0339 (11)
C40.0471 (12)0.0770 (14)0.0527 (11)0.0088 (10)0.0087 (9)0.0333 (11)
C50.0486 (11)0.0686 (13)0.0516 (11)0.0106 (9)0.0193 (9)0.0340 (10)
C60.0343 (9)0.0484 (10)0.0507 (10)0.0068 (7)0.0145 (8)0.0260 (8)
C70.0418 (10)0.0554 (11)0.0511 (11)0.0031 (8)0.0079 (8)0.0260 (9)
C80.0360 (10)0.0667 (13)0.0736 (13)0.0050 (9)0.0216 (9)0.0412 (11)
C90.0311 (9)0.0671 (12)0.0673 (12)0.0090 (8)0.0197 (9)0.0400 (10)
C100.0529 (13)0.1023 (19)0.0737 (15)0.0312 (13)0.0236 (12)0.0498 (15)
C110.0647 (17)0.126 (3)0.0702 (17)0.0308 (17)0.0212 (14)0.0299 (17)
C120.0684 (18)0.0793 (19)0.120 (3)0.0195 (15)0.0432 (18)0.0266 (18)
C130.087 (2)0.088 (2)0.146 (3)0.0402 (16)0.069 (2)0.077 (2)
C140.0671 (15)0.0864 (17)0.0943 (18)0.0279 (13)0.0444 (14)0.0631 (15)
C150.0599 (12)0.0622 (12)0.0420 (10)0.0129 (10)0.0203 (9)0.0217 (9)
C160.0781 (18)0.0771 (17)0.0790 (17)−0.0077 (13)0.0151 (14)0.0347 (14)
C170.142 (3)0.111 (2)0.0703 (17)0.022 (2)0.0513 (19)0.0526 (17)
C180.0818 (19)0.093 (2)0.088 (2)0.0247 (16)0.0135 (16)0.0423 (17)
O10.1114 (17)0.0974 (15)0.0822 (13)0.0288 (13)0.0144 (12)0.0355 (12)
Cl10.0818 (5)0.1278 (7)0.0780 (5)0.0348 (4)0.0259 (4)0.0465 (4)
Si1—C181.834 (3)C9—C101.378 (3)
Si1—C171.850 (3)C9—C141.383 (3)
Si1—C161.852 (3)C10—C111.380 (4)
Si1—C151.890 (2)C10—H100.9300
N1—C71.328 (3)C11—C121.368 (5)
N1—C61.386 (2)C11—H110.9300
N1—C81.476 (2)C12—C131.367 (5)
N2—C71.324 (2)C12—H120.9300
N2—C11.387 (2)C13—C141.376 (4)
N2—C151.478 (2)C13—H130.9300
C1—C21.389 (3)C14—H140.9300
C1—C61.394 (2)C15—H15A0.9700
C2—C31.374 (3)C15—H15B0.9700
C2—H20.9300C16—H16A0.9600
C3—C41.398 (3)C16—H16B0.9600
C3—H30.9300C16—H16C0.9600
C4—C51.369 (3)C17—H17A0.9600
C4—H40.9300C17—H17B0.9600
C5—C61.384 (3)C17—H17C0.9600
C5—H50.9300C18—H18A0.9600
C7—H70.9300C18—H18B0.9600
C8—C91.497 (3)C18—H18C0.9600
C8—H8A0.9700O1—H1A0.8598
C8—H8B0.9700O1—H1B0.8466
C18—Si1—C17111.82 (16)C14—C9—C8120.0 (2)
C18—Si1—C16110.58 (15)C9—C10—C11120.5 (3)
C17—Si1—C16110.93 (16)C9—C10—H10119.8
C18—Si1—C15107.44 (14)C11—C10—H10119.8
C17—Si1—C15105.86 (13)C12—C11—C10120.2 (3)
C16—Si1—C15110.04 (12)C12—C11—H11119.9
C7—N1—C6108.20 (15)C10—C11—H11119.9
C7—N1—C8125.70 (17)C13—C12—C11119.7 (3)
C6—N1—C8126.08 (16)C13—C12—H12120.1
C7—N2—C1108.16 (15)C11—C12—H12120.1
C7—N2—C15126.39 (17)C12—C13—C14120.4 (3)
C1—N2—C15125.43 (16)C12—C13—H13119.8
N2—C1—C2131.97 (17)C14—C13—H13119.8
N2—C1—C6106.56 (16)C13—C14—C9120.4 (3)
C2—C1—C6121.45 (18)C13—C14—H14119.8
C3—C2—C1116.40 (18)C9—C14—H14119.8
C3—C2—H2121.8N2—C15—Si1113.64 (13)
C1—C2—H2121.8N2—C15—H15A108.8
C2—C3—C4122.03 (19)Si1—C15—H15A108.8
C2—C3—H3119.0N2—C15—H15B108.8
C4—C3—H3119.0Si1—C15—H15B108.8
C5—C4—C3121.6 (2)H15A—C15—H15B107.7
C5—C4—H4119.2Si1—C16—H16A109.5
C3—C4—H4119.2Si1—C16—H16B109.5
C4—C5—C6116.92 (18)H16A—C16—H16B109.5
C4—C5—H5121.5Si1—C16—H16C109.5
C6—C5—H5121.5H16A—C16—H16C109.5
C5—C6—N1131.92 (17)H16B—C16—H16C109.5
C5—C6—C1121.62 (17)Si1—C17—H17A109.5
N1—C6—C1106.41 (16)Si1—C17—H17B109.5
N2—C7—N1110.68 (17)H17A—C17—H17B109.5
N2—C7—H7124.7Si1—C17—H17C109.5
N1—C7—H7124.7H17A—C17—H17C109.5
N1—C8—C9112.22 (16)H17B—C17—H17C109.5
N1—C8—H8A109.2Si1—C18—H18A109.5
C9—C8—H8A109.2Si1—C18—H18B109.5
N1—C8—H8B109.2H18A—C18—H18B109.5
C9—C8—H8B109.2Si1—C18—H18C109.5
H8A—C8—H8B107.9H18A—C18—H18C109.5
C10—C9—C14118.7 (2)H18B—C18—H18C109.5
C10—C9—C8121.3 (2)H1A—O1—H1B107.0
C7—N2—C1—C2−178.0 (2)C15—N2—C7—N1178.44 (17)
C15—N2—C1—C23.6 (3)C6—N1—C7—N2−0.3 (2)
C7—N2—C1—C60.1 (2)C8—N1—C7—N2178.18 (18)
C15—N2—C1—C6−178.27 (17)C7—N1—C8—C9109.6 (2)
N2—C1—C2—C3178.1 (2)C6—N1—C8—C9−72.2 (2)
C6—C1—C2—C30.2 (3)N1—C8—C9—C10108.7 (2)
C1—C2—C3—C4−0.6 (3)N1—C8—C9—C14−72.5 (2)
C2—C3—C4—C50.4 (4)C14—C9—C10—C112.3 (4)
C3—C4—C5—C60.2 (3)C8—C9—C10—C11−178.8 (2)
C4—C5—C6—N1−177.7 (2)C9—C10—C11—C12−0.5 (4)
C4—C5—C6—C1−0.6 (3)C10—C11—C12—C13−1.5 (5)
C7—N1—C6—C5177.7 (2)C11—C12—C13—C141.7 (5)
C8—N1—C6—C5−0.7 (3)C12—C13—C14—C90.2 (4)
C7—N1—C6—C10.3 (2)C10—C9—C14—C13−2.2 (3)
C8—N1—C6—C1−178.13 (17)C8—C9—C14—C13179.0 (2)
N2—C1—C6—C5−177.97 (18)C7—N2—C15—Si1−91.7 (2)
C2—C1—C6—C50.4 (3)C1—N2—C15—Si186.4 (2)
N2—C1—C6—N1−0.2 (2)C18—Si1—C15—N260.61 (19)
C2—C1—C6—N1178.10 (18)C17—Si1—C15—N2−179.77 (18)
C1—N2—C7—N10.1 (2)C16—Si1—C15—N2−59.84 (19)
Cg3 is the centroid of the C9–C14 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1A···Cl10.862.453.257 (2)157
O1—H1B···Cl1i0.852.453.250 (3)158
C7—H7···O10.932.513.170 (3)128
C8—H8A···Cl10.972.813.703 (2)153
C3—H3···Cg3ii0.932.693.526 (2)151
Centroid–centroidplane–planeoffset
Cg1···Cg2i3.5690 (15)3.430 (1)16.0
Cg2···Cg2i3.7223 (14)3.446 (1)22.2
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C9–C14 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯Cl10.862.453.257 (2)157
O1—H1B⋯Cl1i0.852.453.250 (3)158
C7—H7⋯O10.932.513.170 (3)128
C8—H8A⋯Cl10.972.813.703 (2)153
C3—H3⋯Cg3ii0.932.693.526 (2)151

Symmetry codes: (i) ; (ii) .

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