Literature DB >> 22968171

A complex immunodeficiency is based on U1 snRNP-mediated poly(A) site suppression.

Jörg Langemeier1, Eva-Maria Schrom, Alona Rabner, Maximilian Radtke, Daniela Zychlinski, Anna Saborowski, Georg Bohn, Yael Mandel-Gutfreund, Jochen Bodem, Christoph Klein, Jens Bohne.   

Abstract

Biallelic mutations in the untranslated regions (UTRs) of mRNAs are rare causes for monogenetic diseases whose mechanisms remain poorly understood. We investigated a 3'UTR mutation resulting in a complex immunodeficiency syndrome caused by decreased mRNA levels of p14/robld3 by a previously unknown mechanism. Here, we show that the mutation creates a functional 5' splice site (SS) and that its recognition by the spliceosomal component U1 snRNP causes p14 mRNA suppression in the absence of splicing. Histone processing signals are able to rescue p14 expression. Therefore, the mutation interferes only with canonical poly(A)-site 3' end processing. Our data suggest that U1 snRNP inhibits cleavage or poly(A) site recognition. This is the first description of a 3'UTR mutation that creates a functional 5'SS causative of a monogenetic disease. Moreover, our data endorse the recently described role of U1 snRNP in suppression of intronic poly(A) sites, which is here deleterious for p14 mRNA biogenesis.

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Year:  2012        PMID: 22968171      PMCID: PMC3474926          DOI: 10.1038/emboj.2012.252

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  56 in total

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Authors:  Gregory M Gilmartin
Journal:  Genes Dev       Date:  2005-11-01       Impact factor: 11.361

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Authors:  Jian-Min Chen; Claude Férec; David N Cooper
Journal:  Hum Genet       Date:  2006-04-28       Impact factor: 4.132

3.  Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

Authors:  Andrea Kyburz; Arno Friedlein; Hanno Langen; Walter Keller
Journal:  Mol Cell       Date:  2006-07-21       Impact factor: 17.970

4.  Identification of a rapid mammalian deadenylation-dependent decay pathway and its inhibition by a viral RNA element.

Authors:  Nicholas K Conrad; Stavroula Mili; Eleanor L Marshall; Mei-Di Shu; Joan A Steitz
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

5.  Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.

Authors:  Sven Danckwardt; Isabelle Kaufmann; Marc Gentzel; Konrad U Foerstner; Anne-Susan Gantzert; Niels H Gehring; Gabriele Neu-Yilik; Peer Bork; Walter Keller; Matthias Wilm; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2007-04-26       Impact factor: 11.598

6.  A novel human primary immunodeficiency syndrome caused by deficiency of the endosomal adaptor protein p14.

Authors:  Georg Bohn; Anna Allroth; Gudrun Brandes; Jens Thiel; Erik Glocker; Alejandro A Schäffer; Chozhavendan Rathinam; Nicole Taub; David Teis; Cornelia Zeidler; Ricardo A Dewey; Robert Geffers; Jan Buer; Lukas A Huber; Karl Welte; Bodo Grimbacher; Christoph Klein
Journal:  Nat Med       Date:  2006-12-31       Impact factor: 53.440

7.  Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Authors:  Adam Siepel; Gill Bejerano; Jakob S Pedersen; Angie S Hinrichs; Minmei Hou; Kate Rosenbloom; Hiram Clawson; John Spieth; Ladeana W Hillier; Stephen Richards; George M Weinstock; Richard K Wilson; Richard A Gibbs; W James Kent; Webb Miller; David Haussler
Journal:  Genome Res       Date:  2005-07-15       Impact factor: 9.043

8.  Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs.

Authors:  Nikolay G Kolev; Joan A Steitz
Journal:  Genes Dev       Date:  2005-10-17       Impact factor: 11.361

9.  p14-MP1-MEK1 signaling regulates endosomal traffic and cellular proliferation during tissue homeostasis.

Authors:  David Teis; Nicole Taub; Robert Kurzbauer; Diana Hilber; Mariana E de Araujo; Miriam Erlacher; Martin Offterdinger; Andreas Villunger; Stephan Geley; Georg Bohn; Christoph Klein; Michael W Hess; Lukas A Huber
Journal:  J Cell Biol       Date:  2006-12-18       Impact factor: 10.539

10.  Splicing of human immunodeficiency virus RNA is position-dependent suggesting sequential removal of introns from the 5' end.

Authors:  Jens Bohne; Harald Wodrich; Hans-Georg Kräusslich
Journal:  Nucleic Acids Res       Date:  2005-02-08       Impact factor: 16.971

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  16 in total

1.  Suboptimal RNA-RNA interaction limits U1 snRNP inhibition of canonical mRNA 3' processing.

Authors:  Junjie Shi; Yanhui Deng; Shanshan Huang; Chunliu Huang; Jinkai Wang; Andy Peng Xiang; Chengguo Yao
Journal:  RNA Biol       Date:  2019-07-07       Impact factor: 4.652

2.  U1 snRNP-mediated poly(A) site suppression: beneficial and deleterious for mRNA fate.

Authors:  Jörg Langemeier; Maximilian Radtke; Jens Bohne
Journal:  RNA Biol       Date:  2013-01-16       Impact factor: 4.652

Review 3.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 4.  Lysosome: The metabolic signaling hub.

Authors:  Dudley W Lamming; Liron Bar-Peled
Journal:  Traffic       Date:  2018-11-14       Impact factor: 6.215

Review 5.  Let It Go: HIV-1 cis-Acting Repressive Sequences.

Authors:  Philipp Niklas Ostermann; Anastasia Ritchie; Johannes Ptok; Heiner Schaal
Journal:  J Virol       Date:  2021-07-12       Impact factor: 5.103

Review 6.  U1 snRNP telescripting: molecular mechanisms and beyond.

Authors:  Yi Ran; Yanhui Deng; Chengguo Yao
Journal:  RNA Biol       Date:  2021-01-15       Impact factor: 4.652

7.  The consensus 5' splice site motif inhibits mRNA nuclear export.

Authors:  Eliza S Lee; Abdalla Akef; Kohila Mahadevan; Alexander F Palazzo
Journal:  PLoS One       Date:  2015-03-31       Impact factor: 3.240

8.  A Complex of U1 snRNP with Cleavage and Polyadenylation Factors Controls Telescripting, Regulating mRNA Transcription in Human Cells.

Authors:  Byung Ran So; Chao Di; Zhiqiang Cai; Christopher C Venters; Jiannan Guo; Jung-Min Oh; Chie Arai; Gideon Dreyfuss
Journal:  Mol Cell       Date:  2019-09-12       Impact factor: 17.970

9.  U1snRNP-mediated suppression of polyadenylation in conjunction with the RNA structure controls poly (A) site selection in foamy viruses.

Authors:  Eva-Maria Schrom; Rebecca Moschall; Maximilian J Hartl; Helena Weitner; David Fecher; Jörg Langemeier; Jens Bohne; Birgitta M Wöhrl; Jochen Bodem
Journal:  Retrovirology       Date:  2013-05-29       Impact factor: 4.602

10.  Poly(A) motif prediction using spectral latent features from human DNA sequences.

Authors:  Bo Xie; Boris R Jankovic; Vladimir B Bajic; Le Song; Xin Gao
Journal:  Bioinformatics       Date:  2013-07-01       Impact factor: 6.937

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