Literature DB >> 22966406

Coexistence of copy number increases of ZNF217 and CYP24A1 in colorectal cancers in a Chinese population.

Zhengyu Fang1, Yi Xiong, Chao Zhang, Jiana Li, Li Liu, Manhui Li, Wei Zhang, Jun Wan.   

Abstract

Evidence suggests that the amplification of chromosome 20q13 is common in colorectal cancers (CRCs). Certain candidate oncogenes located in this region are reported to be associated with tumorigenesis of the gastrointestinal tract. The functional impact of such regions should be extensively investigated in a large number of clinical samples. In this study, 145 CRC samples with matched adjacent normal tissues were collected from a Chinese population for copy number variation (CNV) analysis. Our results showed that both the copy numbers of 25-hydroxy vitamin D3 24-hydroxylase (CYP24A1) and zinc-finger protein 217 (ZNF217) were amplified in a relatively high percentage of CRC samples (51.1 and 60%, respectively). The mRNA expression levels of both CYP24A1 and ZNF217 were found to have increased in the collected CRC samples as compared to the matched adjacent normal tissues. ZNF217, but not CYP24A1, showed a positive correlation between copy number increases and mRNA overexpression. These findings suggest the potential role of CNVs of certain oncogenes in CRCs.

Entities:  

Year:  2010        PMID: 22966406      PMCID: PMC3436466          DOI: 10.3892/ol_00000163

Source DB:  PubMed          Journal:  Oncol Lett        ISSN: 1792-1074            Impact factor:   2.967


  39 in total

Review 1.  Comparative genomic hybridization.

Authors:  Daniel Pinkel; Donna G Albertson
Journal:  Annu Rev Genomics Hum Genet       Date:  2005       Impact factor: 8.929

Review 2.  Genetic variation in human gene expression.

Authors:  Emmanouil T Dermitzakis; Barbara E Stranger
Journal:  Mamm Genome       Date:  2006-06-12       Impact factor: 2.957

Review 3.  Side effects of genome structural changes.

Authors:  Alexandre Reymond; Charlotte N Henrichsen; Louise Harewood; Giuseppe Merla
Journal:  Curr Opin Genet Dev       Date:  2007-10-24       Impact factor: 5.578

Review 4.  The role of transcription factories in large-scale structure and dynamics of interphase chromatin.

Authors:  Tom Sexton; David Umlauf; Sreenivasulu Kurukuti; Peter Fraser
Journal:  Semin Cell Dev Biol       Date:  2007-08-25       Impact factor: 7.727

5.  Segmental copy number variation shapes tissue transcriptomes.

Authors:  Charlotte N Henrichsen; Nicolas Vinckenbosch; Sebastian Zöllner; Evelyne Chaignat; Sylvain Pradervand; Frédéric Schütz; Manuel Ruedi; Henrik Kaessmann; Alexandre Reymond
Journal:  Nat Genet       Date:  2009-03-08       Impact factor: 38.330

6.  Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities.

Authors:  Martin Schäfer; Holger Schwender; Sylvia Merk; Claudia Haferlach; Katja Ickstadt; Martin Dugas
Journal:  Bioinformatics       Date:  2009-10-14       Impact factor: 6.937

Review 7.  Predisposition to colorectal cancer: exploiting copy number variation to identify novel predisposing genes and mechanisms.

Authors:  R Venkatachalam; M J L Ligtenberg; N Hoogerbrugge; A Geurts van Kessel; R P Kuiper
Journal:  Cytogenet Genome Res       Date:  2009-03-11       Impact factor: 1.636

8.  High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.

Authors:  Kentaro Nakao; Kshama R Mehta; Jane Fridlyand; Dan H Moore; Ajay N Jain; Amalia Lafuente; John W Wiencke; Jonathan P Terdiman; Frederic M Waldman
Journal:  Carcinogenesis       Date:  2004-03-04       Impact factor: 4.944

Review 9.  Copy-number variation: the end of the human genome?

Authors:  Paul H Dear
Journal:  Trends Biotechnol       Date:  2009-07-01       Impact factor: 19.536

10.  A comprehensive analysis of the CDKN2A gene in childhood acute lymphoblastic leukemia reveals genomic deletion, copy number neutral loss of heterozygosity, and association with specific cytogenetic subgroups.

Authors:  Sarina Sulong; Anthony V Moorman; Julie A E Irving; Jonathan C Strefford; Zoe J Konn; Marian C Case; Lynne Minto; Kerry E Barber; Helen Parker; Sarah L Wright; Adam R M Stewart; Simon Bailey; Nick P Bown; Andrew G Hall; Christine J Harrison
Journal:  Blood       Date:  2008-10-06       Impact factor: 22.113

View more
  4 in total

Review 1.  Somatic gene copy number alterations in colorectal cancer: new quest for cancer drivers and biomarkers.

Authors:  H Wang; L Liang; J-Y Fang; J Xu
Journal:  Oncogene       Date:  2015-08-10       Impact factor: 9.867

Review 2.  The dark side of ZNF217, a key regulator of tumorigenesis with powerful biomarker value.

Authors:  Pascale A Cohen; Caterina F Donini; Nhan T Nguyen; Hubert Lincet; Julie A Vendrell
Journal:  Oncotarget       Date:  2015-12-08

3.  Cell-type specific features of circular RNA expression.

Authors:  Julia Salzman; Raymond E Chen; Mari N Olsen; Peter L Wang; Patrick O Brown
Journal:  PLoS Genet       Date:  2013-09-05       Impact factor: 5.917

4.  Genomic similarity between gastroesophageal junction and esophageal Barrett's adenocarcinomas.

Authors:  Daysha Ferrer-Torres; Derek J Nancarrow; Rork Kuick; Dafydd G Thomas; Ernest Nadal; Jules Lin; Andrew C Chang; Rishindra M Reddy; Mark B Orringer; Jeremy M G Taylor; Thomas D Wang; David G Beer
Journal:  Oncotarget       Date:  2016-08-23
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.