Literature DB >> 16783632

Genetic variation in human gene expression.

Emmanouil T Dermitzakis1, Barbara E Stranger.   

Abstract

Gene expression variation has been the focus of many studies in the past few years. The relevance of gene regulation and gene expression to disease and the development of the technologies used to screen large numbers of genes simultaneously have allowed this rapid development. In this review we discuss issues relating to the biological information one obtains from such studies and the biological significance and use of signals from mapping of gene expression variation.

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Year:  2006        PMID: 16783632     DOI: 10.1007/s00335-006-0005-y

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  30 in total

1.  Numerous potentially functional but non-genic conserved sequences on human chromosome 21.

Authors:  Emmanouil T Dermitzakis; Alexandre Reymond; Robert Lyle; Nathalie Scamuffa; Catherine Ucla; Samuel Deutsch; Brian J Stevenson; Volker Flegel; Philipp Bucher; C Victor Jongeneel; Stylianos E Antonarakis
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

2.  Allelic variation in human gene expression.

Authors:  Hai Yan; Weishi Yuan; Victor E Velculescu; Bert Vogelstein; Kenneth W Kinzler
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

3.  Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay.

Authors:  Shirin Khambata-Ford; Yueyi Liu; Christopher Gleason; Mark Dickson; Russ B Altman; Serafim Batzoglou; Richard M Myers
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043

4.  Statistical significance for genomewide studies.

Authors:  John D Storey; Robert Tibshirani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-25       Impact factor: 11.205

5.  A survey of genetic and epigenetic variation affecting human gene expression.

Authors:  Tomi Pastinen; Robert Sladek; Scott Gurd; Alya'a Sammak; Bing Ge; Pierre Lepage; Karine Lavergne; Amelie Villeneuve; Tiffany Gaudin; Helena Brändström; Allon Beck; Andrei Verner; Jade Kingsley; Eef Harmsen; Damian Labuda; Kenneth Morgan; Marie-Claude Vohl; Anna K Naumova; Daniel Sinnett; Thomas J Hudson
Journal:  Physiol Genomics       Date:  2004-01-15       Impact factor: 3.107

6.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

Review 7.  The quantitative genetics of transcription.

Authors:  Greg Gibson; Bruce Weir
Journal:  Trends Genet       Date:  2005-09-08       Impact factor: 11.639

8.  Genetic dissection of transcriptional regulation in budding yeast.

Authors:  Rachel B Brem; Gaël Yvert; Rebecca Clinton; Leonid Kruglyak
Journal:  Science       Date:  2002-03-28       Impact factor: 47.728

9.  Genetics of gene expression surveyed in maize, mouse and man.

Authors:  Eric E Schadt; Stephanie A Monks; Thomas A Drake; Aldons J Lusis; Nam Che; Veronica Colinayo; Thomas G Ruff; Stephen B Milligan; John R Lamb; Guy Cavet; Peter S Linsley; Mao Mao; Roland B Stoughton; Stephen H Friend
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

10.  Large-scale copy number polymorphism in the human genome.

Authors:  Jonathan Sebat; B Lakshmi; Jennifer Troge; Joan Alexander; Janet Young; Pär Lundin; Susanne Månér; Hillary Massa; Megan Walker; Maoyen Chi; Nicholas Navin; Robert Lucito; John Healy; James Hicks; Kenny Ye; Andrew Reiner; T Conrad Gilliam; Barbara Trask; Nick Patterson; Anders Zetterberg; Michael Wigler
Journal:  Science       Date:  2004-07-23       Impact factor: 47.728

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  21 in total

Review 1.  Allele-specific DNA methylation: beyond imprinting.

Authors:  Benjamin Tycko
Journal:  Hum Mol Genet       Date:  2010-09-20       Impact factor: 6.150

2.  Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells.

Authors:  Nikhil Garge; Huaqin Pan; Megan D Rowland; Benjamin J Cargile; Xinxin Zhang; Phillip C Cooley; Grier P Page; Maureen K Bunger
Journal:  Mol Cell Proteomics       Date:  2010-02-23       Impact factor: 5.911

3.  Investigation of copy-number variations of C8orf4 in hematological malignancies.

Authors:  Jiahao Zhang; Yan Gao; Xiaosu Zhao; Ming Guan; Wei Zhang; Jun Wan; Bo Yu
Journal:  Med Oncol       Date:  2010-09-29       Impact factor: 3.064

4.  Mapping allele-specific DNA methylation: a new tool for maximizing information from GWAS.

Authors:  Benjamin Tycko
Journal:  Am J Hum Genet       Date:  2010-02-12       Impact factor: 11.025

5.  Coexistence of copy number increases of ZNF217 and CYP24A1 in colorectal cancers in a Chinese population.

Authors:  Zhengyu Fang; Yi Xiong; Chao Zhang; Jiana Li; Li Liu; Manhui Li; Wei Zhang; Jun Wan
Journal:  Oncol Lett       Date:  2010-09-01       Impact factor: 2.967

6.  Amplifications of NCOA3 gene in colorectal cancers in a Chinese population.

Authors:  Zhi Li; Zheng-Yu Fang; Yi Ding; Wan-Tong Yao; Yang Yang; Zhong-Qing Zhu; Wen Wang; Qin-Xian Zhang
Journal:  World J Gastroenterol       Date:  2012-02-28       Impact factor: 5.742

7.  APC gene deletions in gastric adenocarcinomas in a Chinese population: a correlation with tumour progression.

Authors:  Zhengyu Fang; Yi Xiong; Jiana Li; Li Liu; Wei Zhang; Chao Zhang; Jun Wan
Journal:  Clin Transl Oncol       Date:  2012-01       Impact factor: 3.405

Review 8.  Gene expression studies in major depression.

Authors:  Divya Mehta; Andreas Menke; Elisabeth B Binder
Journal:  Curr Psychiatry Rep       Date:  2010-04       Impact factor: 5.285

9.  Relative impact of nucleotide and copy number variation on gene expression phenotypes.

Authors:  Barbara E Stranger; Matthew S Forrest; Mark Dunning; Catherine E Ingle; Claude Beazley; Natalie Thorne; Richard Redon; Christine P Bird; Anna de Grassi; Charles Lee; Chris Tyler-Smith; Nigel Carter; Stephen W Scherer; Simon Tavaré; Panagiotis Deloukas; Matthew E Hurles; Emmanouil T Dermitzakis
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

10.  Extent of differential allelic expression of candidate breast cancer genes is similar in blood and breast.

Authors:  Ana-Teresa Maia; Inmaculada Spiteri; Alvin J X Lee; Martin O'Reilly; Linda Jones; Carlos Caldas; Bruce A J Ponder
Journal:  Breast Cancer Res       Date:  2009-12-10       Impact factor: 6.466

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