Literature DB >> 22944245

Tricks an IRES uses to enslave ribosomes.

Sunnie R Thompson1.   

Abstract

In eukaryotes, mRNAs are primarily translated through a cap-dependent mechanism whereby initiation factors recruit the 40S ribosomal subunit to a cap structure at the 5' end of the mRNA. However, some viral and cellular messages initiate protein synthesis without a cap. They use a structured RNA element termed an internal ribosome entry site (IRES) to recruit the 40S ribosomal subunit. IRESs were discovered over 20 years ago, but only recently have studies using a model IRES from dicistroviruses expanded our understanding of how a 3D RNA structure can capture and manipulate the ribosome to initiate translation.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22944245      PMCID: PMC3479354          DOI: 10.1016/j.tim.2012.08.002

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  71 in total

1.  A role for the 30S subunit E site in maintenance of the translational reading frame.

Authors:  Aishwarya Devaraj; Shinichiro Shoji; Eric D Holbrook; Kurt Fredrick
Journal:  RNA       Date:  2008-12-17       Impact factor: 4.942

2.  Conserved element of the dicistrovirus IGR IRES that mimics an E-site tRNA/ribosome interaction mediates multiple functions.

Authors:  Christopher J Jang; Miranda C Y Lo; Eric Jan
Journal:  J Mol Biol       Date:  2009-01-29       Impact factor: 5.469

Review 3.  Functional analysis of structural motifs in dicistroviruses.

Authors:  Nobuhiko Nakashima; Toshio Uchiumi
Journal:  Virus Res       Date:  2008-07-25       Impact factor: 3.303

4.  Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs.

Authors:  C Y Chen; P Sarnow
Journal:  Science       Date:  1995-04-21       Impact factor: 47.728

5.  A segment of the 5' nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation.

Authors:  S K Jang; H G Kräusslich; M J Nicklin; G M Duke; A C Palmenberg; E Wimmer
Journal:  J Virol       Date:  1988-08       Impact factor: 5.103

6.  Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry.

Authors:  T V Pestova; C U Hellen; I N Shatsky
Journal:  Mol Cell Biol       Date:  1996-12       Impact factor: 4.272

7.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

8.  Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly.

Authors:  Tatyana V Pestova; Ivan B Lomakin; Christopher U T Hellen
Journal:  EMBO Rep       Date:  2004-09       Impact factor: 8.807

9.  The 5' nontranslated region of hepatitis A virus RNA: secondary structure and elements required for translation in vitro.

Authors:  E A Brown; S P Day; R W Jansen; S M Lemon
Journal:  J Virol       Date:  1991-11       Impact factor: 5.103

10.  Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA.

Authors:  J Pelletier; N Sonenberg
Journal:  Nature       Date:  1988-07-28       Impact factor: 49.962

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  27 in total

1.  Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3'UTRs In Vivo.

Authors:  David J Young; Nicholas R Guydosh; Fan Zhang; Alan G Hinnebusch; Rachel Green
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  Biophysical Studies of the Binding of Viral RNA with the 80S Ribosome Using switchSENSE.

Authors:  Emma Schenckbecher; Guillaume Bec; Taiichi Sakamoto; Benoit Meyer; Eric Ennifar
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Computational approaches for the analysis of RNA-protein interactions: A primer for biologists.

Authors:  Kat S Moore; Peter A C 't Hoen
Journal:  J Biol Chem       Date:  2018-11-19       Impact factor: 5.157

Review 4.  RNA families in Epstein-Barr virus.

Authors:  Walter N Moss; Nara Lee; Genaro Pimienta; Joan A Steitz
Journal:  RNA Biol       Date:  2013-12-20       Impact factor: 4.652

5.  Thiouracil cross-linking mass spectrometry: a cell-based method to identify host factors involved in viral amplification.

Authors:  Erik M Lenarcic; Dori M Landry; Todd M Greco; Ileana M Cristea; Sunnie R Thompson
Journal:  J Virol       Date:  2013-06-05       Impact factor: 5.103

6.  Novel function of PITH domain-containing 1 as an activator of internal ribosomal entry site to enhance RUNX1 expression and promote megakaryocyte differentiation.

Authors:  Bin Lu; Xueqin Sun; Yuxuan Chen; Qi Jin; Qin Liang; Shangqin Liu; Yamu Li; Yan Zhou; Wenxin Li; Zan Huang
Journal:  Cell Mol Life Sci       Date:  2014-08-19       Impact factor: 9.261

7.  Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES.

Authors:  Margarita Muhs; Tarek Hilal; Thorsten Mielke; Maxim A Skabkin; Karissa Y Sanbonmatsu; Tatyana V Pestova; Christian M T Spahn
Journal:  Mol Cell       Date:  2015-01-15       Impact factor: 17.970

8.  N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men.

Authors:  Petra Van Damme; Daria Gawron; Wim Van Criekinge; Gerben Menschaert
Journal:  Mol Cell Proteomics       Date:  2014-03-12       Impact factor: 5.911

Review 9.  RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors:  Amber Willbanks; Shaun Wood; Jason X Cheng
Journal:  Genes (Basel)       Date:  2021-04-22       Impact factor: 4.096

Review 10.  The complexity of miRNA-mediated repression.

Authors:  A Wilczynska; M Bushell
Journal:  Cell Death Differ       Date:  2014-09-05       Impact factor: 15.828

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