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Literature DB >> 24441309

RNA families in Epstein-Barr virus.

Walter N Moss¹, Nara Lee¹, Genaro Pimienta¹, Joan A Steitz¹.

Abstract

Epstein-Barr virus (EBV) is a tumorigenic human γ-herpesvirus, which produces several known structured RNAs with functional importance: two are implicated in latency maintenance and tumorigenic phenotypes, EBER1 and EBER2; a viral small nucleolar RNA (v-snoRNA1) that may generate a small regulatory RNA; and an internal ribosomal entry site in the EBNA1 mRNA. A recent bioinformatics and RNA-Seq study of EBV identified two novel EBV non-coding (nc)RNAs with evolutionary conservation in lymphocryptoviruses and likely functional importance. Both RNAs are transcribed from a repetitive region of the EBV genome (the W repeats) during a highly oncogenic type of viral latency. One novel ncRNA can form a massive (586 nt) hairpin, while the other RNA is generated from a short (81 nt) intron and is found in high abundance in EBV-infected cells.

Entities: Species

Keywords: EBER; Epstein–Barr virus; latency; ncRNA; pseudoknot; stable intronic sequence RNA

Mesh：

Substances：

Year: 2013 PMID： 24441309 PMCID： PMC3929418 DOI： 10.4161/rna.27488

Source DB: PubMed Journal: RNA Biol ISSN： 1547-6286 Impact factor: 4.652

68 in total

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Review 9. Tricks an IRES uses to enslave ribosomes.

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10. RNAalifold: improved consensus structure prediction for RNA alignments.

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21 in total

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2. High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project.

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8. Consideration of Epstein-Barr Virus-Encoded Noncoding RNAs EBER1 and EBER2 as a Functional Backup of Viral Oncoprotein Latent Membrane Protein 1.

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9. A proximity-dependent assay for specific RNA-protein interactions in intact cells.

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Review 10. Genetics and Molecular Biology of Epstein-Barr Virus-Encoded BART MicroRNA: A Paradigm for Viral Modulation of Host Immune Response Genes and Genome Stability.

Authors: David H Dreyfus
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