Literature DB >> 22941985

A flexible, open, decentralized system for digital pathology networks.

Robert Schuler1, David E Smith, Gowri Kumaraguruparan, Ann Chervenak, Anne D Lewis, Dallas M Hyde, Carl Kesselman.   

Abstract

High-resolution digital imaging is enabling digital archiving and sharing of digitized microscopy slides and new methods for digital pathology. Collaborative research centers, outsourced medical services, and multi-site organizations stand to benefit from sharing pathology data in a digital pathology network. Yet significant technological challenges remain due to the large size and volume of digitized whole slide images. While information systems do exist for managing local pathology laboratories, they tend to be oriented toward narrow clinical use cases or offer closed ecosystems around proprietary formats. Few solutions exist for networking digital pathology operations. Here we present a system architecture and implementation of a digital pathology network and share results from a production system that federates major research centers.

Entities:  

Mesh:

Year:  2012        PMID: 22941985      PMCID: PMC3966426     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  12 in total

1.  Group for research in pathology education online resources to facilitate pathology instruction.

Authors:  Kristopher N Jones; Regina Kreisle; Roger W Geiss; John H Holliman; Patsy H Lill; Peter G Anderson
Journal:  Arch Pathol Lab Med       Date:  2002-03       Impact factor: 5.534

2.  High-throughput zebrafish histology.

Authors:  Nicole A Sabaliauskas; Christina A Foutz; Jason R Mest; Lynn R Budgeon; Adam T Sidor; Joseph A Gershenson; Sanjay B Joshi; Keith C Cheng
Journal:  Methods       Date:  2006-07       Impact factor: 3.608

3.  Internet-enabled high-resolution brain mapping and virtual microscopy.

Authors:  Shawn Mikula; Issac Trotts; James M Stone; Edward G Jones
Journal:  Neuroimage       Date:  2007-01-16       Impact factor: 6.556

4.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

5.  A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN).

Authors:  David B Keator; J S Grethe; D Marcus; B Ozyurt; S Gadde; Sean Murphy; S Pieper; D Greve; R Notestine; H J Bockholt; P Papadopoulos
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-03

6.  Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

Authors:  Karl G Helmer; Jose Luis Ambite; Joseph Ames; Rachana Ananthakrishnan; Gully Burns; Ann L Chervenak; Ian Foster; Lee Liming; David Keator; Fabio Macciardi; Ravi Madduri; John-Paul Navarro; Steven Potkin; Bruce Rosen; Seth Ruffins; Robert Schuler; Jessica A Turner; Arthur Toga; Christina Williams; Carl Kesselman
Journal:  J Am Med Inform Assoc       Date:  2011-04-22       Impact factor: 4.497

7.  High-resolution digital brain atlases: a Hubble telescope for the brain.

Authors:  Edward G Jones; James M Stone; Harvey J Karten
Journal:  Ann N Y Acad Sci       Date:  2011-05       Impact factor: 5.691

Review 8.  Digital pathology in drug discovery and development: multisite integration.

Authors:  Steven J Potts
Journal:  Drug Discov Today       Date:  2009-07-09       Impact factor: 7.851

9.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Neuroscience Data Integration through Mediation: An (F)BIRN Case Study.

Authors:  Naveen Ashish; José Luis Ambite; Maria Muslea; Jessica A Turner
Journal:  Front Neuroinform       Date:  2010-12-28       Impact factor: 4.081

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  2 in total

Review 1.  Federated Analysis of Neuroimaging Data: A Review of the Field.

Authors:  Kelly Rootes-Murdy; Harshvardhan Gazula; Eric Verner; Ross Kelly; Thomas DeRamus; Sergey Plis; Anand Sarwate; Jessica Turner; Vince Calhoun
Journal:  Neuroinformatics       Date:  2021-11-22

2.  Clinical Neuropathology Views - 2/2016: Digital networking in European neuropathology: An initiative to facilitate truly interactive consultations.

Authors:  Miguel A Idoate; Marcial García-Rojo
Journal:  Clin Neuropathol       Date:  2016 Mar-Apr       Impact factor: 1.368

  2 in total

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