Literature DB >> 34807353

Federated Analysis of Neuroimaging Data: A Review of the Field.

Kelly Rootes-Murdy1,2, Harshvardhan Gazula3, Eric Verner2, Ross Kelly2, Thomas DeRamus2, Sergey Plis2, Anand Sarwate4, Jessica Turner1,2, Vince Calhoun5,6.   

Abstract

The field of neuroimaging has embraced sharing data to collaboratively advance our understanding of the brain. However, data sharing, especially across sites with large amounts of protected health information (PHI), can be cumbersome and time intensive. Recently, there has been a greater push towards collaborative frameworks that enable large-scale federated analysis of neuroimaging data without the data having to leave its original location. However, there still remains a need for a standardized federated approach that not only allows for data sharing adhering to the FAIR (Findability, Accessibility, Interoperability, Reusability) data principles, but also streamlines analyses and communication while maintaining subject privacy. In this paper, we review a non-exhaustive list of neuroimaging analytic tools and frameworks currently in use. We then provide an update on our federated neuroimaging analysis software system, the Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation (COINSTAC). In the end, we share insights on future research directions for federated analysis of neuroimaging data.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  COINSTAC; Federated learning; Neuroimaging

Mesh:

Year:  2021        PMID: 34807353      PMCID: PMC9124226          DOI: 10.1007/s12021-021-09550-7

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  34 in total

Review 1.  Scanning the horizon: towards transparent and reproducible neuroimaging research.

Authors:  Russell A Poldrack; Chris I Baker; Joke Durnez; Krzysztof J Gorgolewski; Paul M Matthews; Marcus R Munafò; Thomas E Nichols; Jean-Baptiste Poline; Edward Vul; Tal Yarkoni
Journal:  Nat Rev Neurosci       Date:  2017-01-05       Impact factor: 34.870

2.  COINS Data Exchange: An open platform for compiling, curating, and disseminating neuroimaging data.

Authors:  Drew Landis; William Courtney; Christopher Dieringer; Ross Kelly; Margaret King; Brittny Miller; Runtang Wang; Dylan Wood; Jessica A Turner; Vince D Calhoun
Journal:  Neuroimage       Date:  2015-05-24       Impact factor: 6.556

3.  COINSTAC: Decentralizing the future of brain imaging analysis.

Authors:  Jing Ming; Eric Verner; Anand Sarwate; Ross Kelly; Cory Reed; Torran Kahleck; Rogers Silva; Sandeep Panta; Jessica Turner; Sergey Plis; Vince Calhoun
Journal:  F1000Res       Date:  2017-08-18

4.  Assessment of the impact of shared brain imaging data on the scientific literature.

Authors:  Michael P Milham; R Cameron Craddock; Jake J Son; Michael Fleischmann; Jon Clucas; Helen Xu; Bonhwang Koo; Anirudh Krishnakumar; Bharat B Biswal; F Xavier Castellanos; Stan Colcombe; Adriana Di Martino; Xi-Nian Zuo; Arno Klein
Journal:  Nat Commun       Date:  2018-07-19       Impact factor: 17.694

5.  fMRIPrep: a robust preprocessing pipeline for functional MRI.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski; Oscar Esteban; Christopher J Markiewicz; Ross W Blair; Craig A Moodie; A Ilkay Isik; Asier Erramuzpe; James D Kent; Mathias Goncalves; Elizabeth DuPre; Madeleine Snyder; Hiroyuki Oya; Satrajit S Ghosh; Jessey Wright; Joke Durnez
Journal:  Nat Methods       Date:  2018-12-10       Impact factor: 28.547

6.  Deep learning encodes robust discriminative neuroimaging representations to outperform standard machine learning.

Authors:  Anees Abrol; Zening Fu; Mustafa Salman; Rogers Silva; Yuhui Du; Sergey Plis; Vince Calhoun
Journal:  Nat Commun       Date:  2021-01-13       Impact factor: 14.919

7.  ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability.

Authors:  Jessica A Turner; Vince D Calhoun; Paul M Thompson; Neda Jahanshad; Christopher R K Ching; Sophia I Thomopoulos; Eric Verner; Gregory P Strauss; Anthony O Ahmed; Matthew D Turner; Sunitha Basodi; Judith M Ford; Daniel H Mathalon; Adrian Preda; Aysenil Belger; Bryon A Mueller; Kelvin O Lim; Theo G M van Erp
Journal:  Neuroinformatics       Date:  2021-11-30

8.  Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation.

Authors:  Anand D Sarwate; Sergey M Plis; Jessica A Turner; Mohammad R Arbabshirani; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2014-04-07       Impact factor: 4.081

9.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

10.  NeuroMark: An automated and adaptive ICA based pipeline to identify reproducible fMRI markers of brain disorders.

Authors:  Yuhui Du; Zening Fu; Jing Sui; Shuang Gao; Ying Xing; Dongdong Lin; Mustafa Salman; Anees Abrol; Md Abdur Rahaman; Jiayu Chen; L Elliot Hong; Peter Kochunov; Elizabeth A Osuch; Vince D Calhoun
Journal:  Neuroimage Clin       Date:  2020-08-11       Impact factor: 4.881

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