Literature DB >> 21599693

High-resolution digital brain atlases: a Hubble telescope for the brain.

Edward G Jones1, James M Stone, Harvey J Karten.   

Abstract

We describe implementation of a method for digitizing at microscopic resolution brain tissue sections containing normal and experimental data and for making the content readily accessible online. Web-accessible brain atlases and virtual microscopes for online examination can be developed using existing computer and internet technologies. Resulting databases, made up of hierarchically organized, multiresolution images, enable rapid, seamless navigation through the vast image datasets generated by high-resolution scanning. Tools for visualization and annotation of virtual microscope slides enable remote and universal data sharing. Interactive visualization of a complete series of brain sections digitized at subneuronal levels of resolution offers fine grain and large-scale localization and quantification of many aspects of neural organization and structure. The method is straightforward and replicable; it can increase accessibility and facilitate sharing of neuroanatomical data. It provides an opportunity for capturing and preserving irreplaceable, archival neurohistological collections and making them available to all scientists in perpetuity, if resources could be obtained from hitherto uninterested agencies of scientific support.
© 2011 New York Academy of Sciences.

Mesh:

Year:  2011        PMID: 21599693     DOI: 10.1111/j.1749-6632.2011.06009.x

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  10 in total

1.  PET imaging of ischemia-induced impairment of mitochondrial complex I function in monkey brain.

Authors:  Hideo Tsukada; Hiroyuki Ohba; Shingo Nishiyama; Masakatsu Kanazawa; Takeharu Kakiuchi; Norihiro Harada
Journal:  J Cereb Blood Flow Metab       Date:  2014-01-22       Impact factor: 6.200

2.  Evaluation of 18F-BCPP-EF for mitochondrial complex 1 imaging in the brain of conscious monkeys using PET.

Authors:  Hideo Tsukada; Hiroyuki Ohba; Masakatsu Kanazawa; Takeharu Kakiuchi; Norihiro Harada
Journal:  Eur J Nucl Med Mol Imaging       Date:  2013-11-21       Impact factor: 9.236

3.  Neural networks of the mouse neocortex.

Authors:  Brian Zingg; Houri Hintiryan; Lin Gou; Monica Y Song; Maxwell Bay; Michael S Bienkowski; Nicholas N Foster; Seita Yamashita; Ian Bowman; Arthur W Toga; Hong-Wei Dong
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

4.  Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas.

Authors:  Harvey J Karten; Agnieszka Brzozowska-Prechtl; Peter V Lovell; Daniel D Tang; Claudio V Mello; Haibin Wang; Partha P Mitra
Journal:  J Comp Neurol       Date:  2013-11       Impact factor: 3.215

5.  Comparing amyloid-β deposition, neuroinflammation, glucose metabolism, and mitochondrial complex I activity in brain: a PET study in aged monkeys.

Authors:  Hideo Tsukada; Shingo Nishiyama; Hiroyuki Ohba; Masakatsu Kanazawa; Takeharu Kakiuchi; Norihiro Harada
Journal:  Eur J Nucl Med Mol Imaging       Date:  2014-06-12       Impact factor: 9.236

Review 6.  Mapping brain circuitry with a light microscope.

Authors:  Pavel Osten; Troy W Margrie
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

7.  A flexible, open, decentralized system for digital pathology networks.

Authors:  Robert Schuler; David E Smith; Gowri Kumaraguruparan; Ann Chervenak; Anne D Lewis; Dallas M Hyde; Carl Kesselman
Journal:  Stud Health Technol Inform       Date:  2012

8.  Comprehensive connectivity of the mouse main olfactory bulb: analysis and online digital atlas.

Authors:  Houri Hintiryan; Lin Gou; Brian Zingg; Seita Yamashita; Hannah M Lyden; Monica Y Song; Arleen K Grewal; Xinhai Zhang; Arthur W Toga; Hong-Wei Dong
Journal:  Front Neuroanat       Date:  2012-08-07       Impact factor: 3.856

9.  FlexTileSource: An OpenSeadragon Extension for Efficient Whole-Slide Image Visualization.

Authors:  Peter J Schüffler; Gamze Gokturk Ozcan; Hikmat Al-Ahmadie; Thomas J Fuchs
Journal:  J Pathol Inform       Date:  2021-09-14

Review 10.  The mind-brain relationship as a mathematical problem.

Authors:  Giorgio A Ascoli
Journal:  ISRN Neurosci       Date:  2013-04-14
  10 in total

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