Literature DB >> 22941606

Construction of plasmids containing site-specific DNA interstrand cross-links for biochemical and cell biological studies.

Milica Enoiu1, The Vinh Ho, David T Long, Johannes C Walter, Orlando D Schärer.   

Abstract

Plasmids containing a site-specific DNA interstrand cross-link (ICL) are invaluable tools for the investigation of ICL repair pathways at the biochemical and cellular level. We describe a procedure for preparation of plasmid DNA substrates containing a single ICL at a specific site. The procedure is versatile, leads to reliable yields of pure DNA substrate, and is suitable for the incorporation of virtually any type of DNA lesion into plasmids.

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Year:  2012        PMID： 22941606      PMCID： PMC3734532          DOI： 10.1007/978-1-61779-998-3_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  13 in total

1.  Thermal and thermodynamic properties of duplex DNA containing site-specific interstrand cross-link of antitumor cisplatin or its clinically ineffective trans isomer.

Authors:  C Hofr; V Brabec
Journal:  J Biol Chem       Date:  2000-12-04       Impact factor: 5.157

2.  hMutSbeta is required for the recognition and uncoupling of psoralen interstrand cross-links in vitro.

Authors:  Nianxiang Zhang; Xiaoyan Lu; Xiaoshan Zhang; Carolyn A Peterson; Randy J Legerski
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

Review 3.  DNA interstrand crosslinks: natural and drug-induced DNA adducts that induce unique cellular responses.

Authors:  Orlando D Schärer
Journal:  Chembiochem       Date:  2005-01       Impact factor: 3.164

Review 4.  Formation and repair of interstrand cross-links in DNA.

Authors:  David M Noll; Tracey McGregor Mason; Paul S Miller
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

5.  Mechanism of replication-coupled DNA interstrand crosslink repair.

Authors:  Markus Räschle; Puck Knipscheer; Puck Knipsheer; Milica Enoiu; Todor Angelov; Jingchuan Sun; Jack D Griffith; Tom E Ellenberger; Orlando D Schärer; Johannes C Walter
Journal:  Cell       Date:  2008-09-19       Impact factor: 41.582

6.  Involvement of nucleotide excision repair in a recombination-independent and error-prone pathway of DNA interstrand cross-link repair.

Authors:  X Wang; C A Peterson; H Zheng; R S Nairn; R J Legerski; L Li
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

7.  Synthesis and molecular modeling of a nitrogen mustard DNA interstrand crosslink.

Authors:  Angelo Guainazzi; Arthur J Campbell; Todor Angelov; Carlos Simmerling; Orlando D Schärer
Journal:  Chemistry       Date:  2010-10-25       Impact factor: 5.236

8.  Generation of DNA interstrand cross-links by post-synthetic reductive amination.

Authors:  Todor Angelov; Angelo Guainazzi; Orlando D Schärer
Journal:  Org Lett       Date:  2009-02-05       Impact factor: 6.005

9.  Recruitment of fanconi anemia and breast cancer proteins to DNA damage sites is differentially governed by replication.

Authors:  Xi Shen; Huong Do; Yongjiang Li; Woo-Hyun Chung; Maria Tomasz; Johan P de Winter; Bing Xia; Stephen J Elledge; Weidong Wang; Lei Li
Journal:  Mol Cell       Date:  2009-09-11       Impact factor: 17.970

10.  Nucleotide excision repair- and polymerase eta-mediated error-prone removal of mitomycin C interstrand cross-links.

Authors:  Huyong Zheng; Xin Wang; Amy J Warren; Randy J Legerski; Rodney S Nairn; Joshua W Hamilton; Lei Li
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272
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  16 in total

1.  Quantitative measurement of transcriptional inhibition and mutagenesis induced by site-specifically incorporated DNA lesions in vitro and in vivo.

Authors:  Changjun You; Yinsheng Wang
Journal:  Nat Protoc       Date:  2015-08-20       Impact factor: 13.491

Review 2.  A role for the base excision repair enzyme NEIL3 in replication-dependent repair of interstrand DNA cross-links derived from psoralen and abasic sites.

Authors:  Zhiyu Yang; Maryam Imani Nejad; Jacqueline Gamboa Varela; Nathan E Price; Yinsheng Wang; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2017-02-20

3.  Regulation of the Rev1-pol ζ complex during bypass of a DNA interstrand cross-link.

Authors:  Magda Budzowska; Thomas G W Graham; Alexandra Sobeck; Shou Waga; Johannes C Walter
Journal:  EMBO J       Date:  2015-06-12       Impact factor: 11.598

4.  BRCA1 promotes unloading of the CMG helicase from a stalled DNA replication fork.

Authors:  David T Long; Vladimir Joukov; Magda Budzowska; Johannes C Walter
Journal:  Mol Cell       Date:  2014-09-11       Impact factor: 17.970

5.  p97 Promotes a Conserved Mechanism of Helicase Unloading during DNA Cross-Link Repair.

Authors:  George Fullbright; Halley B Rycenga; Jordon D Gruber; David T Long
Journal:  Mol Cell Biol       Date:  2016-11-14       Impact factor: 4.272

6.  Replication-Dependent Unhooking of DNA Interstrand Cross-Links by the NEIL3 Glycosylase.

Authors:  Daniel R Semlow; Jieqiong Zhang; Magda Budzowska; Alexander C Drohat; Johannes C Walter
Journal:  Cell       Date:  2016-09-29       Impact factor: 41.582

7.  Bypass of DNA-Protein Cross-links Conjugated to the 7-Deazaguanine Position of DNA by Translesion Synthesis Polymerases.

Authors:  Susith Wickramaratne; Shaofei Ji; Shivam Mukherjee; Yan Su; Matthew G Pence; Lee Lior-Hoffmann; Iwen Fu; Suse Broyde; F Peter Guengerich; Mark Distefano; Orlando D Schärer; Yuk Yin Sham; Natalia Tretyakova
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

8.  A Chemical Probe Targets DNA 5-Formylcytosine Sites and Inhibits TDG Excision, Polymerases Bypass, and Gene Expression.

Authors:  Liang Xu; Ying-Chu Chen; Satoshi Nakajima; Jenny Chong; Lanfeng Wang; Li Lan; Chao Zhang; Dong Wang
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

Review 9.  Imaging cellular responses to antigen tagged DNA damage.

Authors:  Marina A Bellani; Jing Huang; Manikandan Paramasivam; Durga Pokharel; Julia Gichimu; Jing Zhang; Michael M Seidman
Journal:  DNA Repair (Amst)       Date:  2018-08-23

10.  Interstrand DNA Cross-Links Derived from Reaction of a 2-Aminopurine Residue with an Abasic Site.

Authors:  Maryam Imani Nejad; Nathan E Price; Tuhin Haldar; Calvin Lewis; Yinsheng Wang; Kent S Gates
Journal:  ACS Chem Biol       Date:  2019-07-01       Impact factor: 5.100
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