Literature DB >> 22927418

Structural basis for entropy-driven cellulose binding by a type-A cellulose-binding module (CBM) and bacterial expansin.

Nikolaos Georgelis1, Neela H Yennawar, Daniel J Cosgrove.   

Abstract

Components of modular cellulases, type-A cellulose-binding modules (CBMs) bind to crystalline cellulose and enhance enzyme effectiveness, but structural details of the interaction are uncertain. We analyzed cellulose binding by EXLX1, a bacterial expansin with ability to loosen plant cell walls and whose domain D2 has type-A CBM characteristics. EXLX1 strongly binds to crystalline cellulose via D2, whereas its affinity for soluble cellooligosaccharides is weak. Calorimetry indicated cellulose binding was largely entropically driven. We solved the crystal structures of EXLX1 complexed with cellulose-like oligosaccharides to find that EXLX1 binds the ligands through hydrophobic interactions of three linearly arranged aromatic residues in D2. The crystal structures revealed a unique form of ligand-mediated dimerization, with the oligosaccharide sandwiched between two D2 domains in opposite polarity. This report clarifies the molecular target of expansin and the specific molecular interactions of a type-A CBM with cellulose.

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Year:  2012        PMID: 22927418      PMCID: PMC3443152          DOI: 10.1073/pnas.1213200109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

2.  A novel function for the cellulose binding module of cellobiohydrolase I.

Authors:  Lushan Wang; Yuzhong Zhang; Peiji Gao
Journal:  Sci China C Life Sci       Date:  2008-07-13

Review 3.  Genomics of cellulosic biofuels.

Authors:  Edward M Rubin
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

4.  Cellulose crystallinity--a key predictor of the enzymatic hydrolysis rate.

Authors:  Mélanie Hall; Prabuddha Bansal; Jay H Lee; Matthew J Realff; Andreas S Bommarius
Journal:  FEBS J       Date:  2010-02-10       Impact factor: 5.542

Review 5.  Outlook for cellulase improvement: screening and selection strategies.

Authors:  Y-H Percival Zhang; Michael E Himmel; Jonathan R Mielenz
Journal:  Biotechnol Adv       Date:  2006-03-27       Impact factor: 14.227

6.  Molecular basis for the selectivity and specificity of ligand recognition by the family 16 carbohydrate-binding modules from Thermoanaerobacterium polysaccharolyticum ManA.

Authors:  Brian Bae; Samuel Ohene-Adjei; Svetlana Kocherginskaya; Roderick I Mackie; M Ashley Spies; Isaac K O Cann; Satish K Nair
Journal:  J Biol Chem       Date:  2007-11-19       Impact factor: 5.157

7.  Structures of mutants of cellulase Cel48F of Clostridium cellulolyticum in complex with long hemithiocellooligosaccharides give rise to a new view of the substrate pathway during processive action.

Authors:  Goetz Parsiegla; Corinne Reverbel; Chantal Tardif; Hugues Driguez; Richard Haser
Journal:  J Mol Biol       Date:  2007-10-22       Impact factor: 5.469

8.  High speed atomic force microscopy visualizes processive movement of Trichoderma reesei cellobiohydrolase I on crystalline cellulose.

Authors:  Kiyohiko Igarashi; Anu Koivula; Masahisa Wada; Satoshi Kimura; Merja Penttilä; Masahiro Samejima
Journal:  J Biol Chem       Date:  2009-10-26       Impact factor: 5.157

9.  Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization.

Authors:  Frédéric Kerff; Ana Amoroso; Raphaël Herman; Eric Sauvage; Stéphanie Petrella; Patrice Filée; Paulette Charlier; Bernard Joris; Akira Tabuchi; Nikolas Nikolaidis; Daniel J Cosgrove
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-29       Impact factor: 11.205

Review 10.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition.

Authors:  Alisdair B Boraston; David N Bolam; Harry J Gilbert; Gideon J Davies
Journal:  Biochem J       Date:  2004-09-15       Impact factor: 3.857

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  42 in total

1.  Fluorescent Dye Adsorption in Aqueous Suspension to Produce Tagged Cellulose Nanofibers for Visualization on Paper.

Authors:  Emilia Purington; Douglas Bousfield; William M Gramlich
Journal:  Cellulose (Lond)       Date:  2019-04-20       Impact factor: 5.044

2.  Discrete and structurally unique proteins (tāpirins) mediate attachment of extremely thermophilic Caldicellulosiruptor species to cellulose.

Authors:  Sara E Blumer-Schuette; Markus Alahuhta; Jonathan M Conway; Laura L Lee; Jeffrey V Zurawski; Richard J Giannone; Robert L Hettich; Vladimir V Lunin; Michael E Himmel; Robert M Kelly
Journal:  J Biol Chem       Date:  2015-02-26       Impact factor: 5.157

Review 3.  Bacterial expansins and related proteins from the world of microbes.

Authors:  Nikolaos Georgelis; Nikolas Nikolaidis; Daniel J Cosgrove
Journal:  Appl Microbiol Biotechnol       Date:  2015-04-02       Impact factor: 4.813

4.  Sensitivity-enhanced solid-state NMR detection of expansin's target in plant cell walls.

Authors:  Tuo Wang; Yong Bum Park; Marc A Caporini; Melanie Rosay; Linghao Zhong; Daniel J Cosgrove; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-24       Impact factor: 11.205

5.  Genome-wide identification of the expansin gene family in tobacco (Nicotiana tabacum).

Authors:  Anming Ding; Prince Marowa; Yingzhen Kong
Journal:  Mol Genet Genomics       Date:  2016-06-21       Impact factor: 3.291

6.  Identification of SPOR domain amino acids important for septal localization, peptidoglycan binding, and a disulfide bond in the cell division protein FtsN.

Authors:  Tammi R Duncan; Atsushi Yahashiri; S J Ryan Arends; David L Popham; David S Weiss
Journal:  J Bacteriol       Date:  2013-09-20       Impact factor: 3.490

Review 7.  Diffuse Growth of Plant Cell Walls.

Authors:  Daniel J Cosgrove
Journal:  Plant Physiol       Date:  2017-11-14       Impact factor: 8.340

8.  An optics-based variable-temperature assay system for characterizing thermodynamics of biomolecular reactions on solid support.

Authors:  Yiyan Fei; James P Landry; Yanhong Li; Hai Yu; Kam Lau; Shengshu Huang; Harshal A Chokhawala; Xi Chen; X D Zhu
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

9.  Plant-like bacterial expansins play contrasting roles in two tomato vascular pathogens.

Authors:  Matthew A Tancos; Tiffany M Lowe-Power; F Christopher Peritore-Galve; Tuan M Tran; Caitilyn Allen; Christine D Smart
Journal:  Mol Plant Pathol       Date:  2017-12-18       Impact factor: 5.663

10.  A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.

Authors:  Bruna Medeia Campos; Marcelo Vizona Liberato; Thabata Maria Alvarez; Letícia Maria Zanphorlin; Gabriela Cristina Ematsu; Hernane Barud; Igor Polikarpov; Roberto Ruller; Harry J Gilbert; Ana Carolina de Mattos Zeri; Fabio Marcio Squina
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

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