Literature DB >> 24289409

An optics-based variable-temperature assay system for characterizing thermodynamics of biomolecular reactions on solid support.

Yiyan Fei1, James P Landry, Yanhong Li, Hai Yu, Kam Lau, Shengshu Huang, Harshal A Chokhawala, Xi Chen, X D Zhu.   

Abstract

A biological state is equilibrium of multiple concurrent biomolecular reactions. The relative importance of these reactions depends on physiological temperature typically between 10 °C and 50 °C. Experimentally the temperature dependence of binding reaction constants reveals thermodynamics and thus details of these biomolecular processes. We developed a variable-temperature opto-fluidic system for real-time measurement of multiple (400-10,000) biomolecular binding reactions on solid supports from 10 °C to 60 °C within ±0.1 °C. We illustrate the performance of this system with investigation of binding reactions of plant lectins (carbohydrate-binding proteins) with 24 synthetic glycans (i.e., carbohydrates). We found that the lectin-glycan reactions in general can be enthalpy-driven, entropy-driven, or both, and water molecules play critical roles in the thermodynamics of these reactions.

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Year:  2013        PMID: 24289409      PMCID: PMC3838479          DOI: 10.1063/1.4826352

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  23 in total

1.  Temperature dependence and thermodynamics of Klenow polymerase binding to primed-template DNA.

Authors:  Kausiki Datta; Andy J Wowor; Allison J Richard; Vince J LiCata
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

2.  A novel high-throughput scanning microscope for label-free detection of protein and small-molecule chemical microarrays.

Authors:  Y Y Fei; J P Landry; Y S Sun; X D Zhu; J T Luo; X B Wang; K S Lam
Journal:  Rev Sci Instrum       Date:  2008-01       Impact factor: 1.523

3.  Screening small-molecule compound microarrays for protein ligands without fluorescence labeling with a high-throughput scanning microscope.

Authors:  Yiyan Fei; James P Landry; Yungshin Sun; Xiangdong Zhu; Xiaobing Wang; Juntao Luo; Chun-Yi Wu; Kit S Lam
Journal:  J Biomed Opt       Date:  2010 Jan-Feb       Impact factor: 3.170

4.  An unusual carbohydrate binding site revealed by the structures of two Maackia amurensis lectins complexed with sialic acid-containing oligosaccharides.

Authors:  A Imberty; C Gautier; J Lescar; S Pérez; L Wyns; R Loris
Journal:  J Biol Chem       Date:  2000-06-09       Impact factor: 5.157

5.  Measured change in protein solvation with substrate binding and turnover.

Authors:  R P Rand; N L Fuller; P Butko; G Francis; P Nicholls
Journal:  Biochemistry       Date:  1993-06-15       Impact factor: 3.162

6.  Characterization of the carbohydrate binding specificity and kinetic parameters of lectins by using surface plasmon resonance.

Authors:  S R Haseley; P Talaga; J P Kamerling; J F Vliegenthart
Journal:  Anal Biochem       Date:  1999-10-15       Impact factor: 3.365

7.  Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III.

Authors:  Gustavo A Bezerra; Elena Dobrovetsky; Roland Viertlmayr; Aiping Dong; Alexandra Binter; Marija Abramic; Peter Macheroux; Sirano Dhe-Paganon; Karl Gruber
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

8.  Effect of fluorescently labeling protein probes on kinetics of protein-ligand reactions.

Authors:  Y S Sun; J P Landry; Y Y Fei; X D Zhu; J T Luo; X B Wang; K S Lam
Journal:  Langmuir       Date:  2008-12-02       Impact factor: 3.882

9.  Contribution of binding enthalpy and entropy to affinity of antagonist and agonist binding at human and guinea pig histamine H(1)-receptor.

Authors:  Hans-Joachim Wittmann; Roland Seifert; Andrea Strasser
Journal:  Mol Pharmacol       Date:  2009-04-03       Impact factor: 4.436

10.  Thermodynamics of drug-DNA interactions: entropy-driven intercalation and enthalpy-driven outside binding in the ellipticine series.

Authors:  M A Schwaller; G Dodin; J Aubard
Journal:  Biopolymers       Date:  1991-04       Impact factor: 2.505

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  2 in total

1.  Measuring affinity constants of 1450 monoclonal antibodies to peptide targets with a microarray-based label-free assay platform.

Authors:  J P Landry; Yaohuang Ke; Guo-Liang Yu; X D Zhu
Journal:  J Immunol Methods       Date:  2014-12-20       Impact factor: 2.303

2.  Characterization of Receptor Binding Profiles of Influenza A Viruses Using An Ellipsometry-Based Label-Free Glycan Microarray Assay Platform.

Authors:  Yiyan Fei; Yung-Shin Sun; Yanhong Li; Hai Yu; Kam Lau; James P Landry; Zeng Luo; Nicole Baumgarth; Xi Chen; Xiangdong Zhu
Journal:  Biomolecules       Date:  2015-07-16
  2 in total

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