Literature DB >> 22904915

2-{[(Pyridin-2-yl)amino]-meth-yl}phenol.

Shan Gao, Seik Weng Ng.   

Abstract

The planes of the aromatic rings of the title compound, C(12)H(12)N(2)O, are twisted by 50.33 (15)°. The phenol O atom is a hydrogen-bond donor to the pyridine N atom, resulting in the formation of an eight-membered ring in the mol-ecule. The amino N atom is a hydrogen-bond donor to the phenol O atom of an adjacent mol-ecule; this hydrogen bond leads to the formation of a helical chain that runs along the a axis.

Entities:  

Year:  2012        PMID: 22904915      PMCID: PMC3414928          DOI: 10.1107/S1600536812031340

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the related compound 2-{[(pyrazin-2-yl)amino]­meth­yl}­phenol, see: Gao & Ng (2012 ▶). For 2-[(pyridin-3-yl­amino)­meth­yl]phenol, see: Xu et al. (2011 ▶). For the metal adducts of 2-[(pyridin-2-yl­amino)­meth­yl]phenol, see: Yalçın et al. (2007 ▶).

Experimental

Crystal data

C12H12N2O M = 200.24 Orthorhombic, a = 6.3331 (4) Å b = 10.6761 (9) Å c = 15.3714 (10) Å V = 1039.30 (13) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.25 × 0.19 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.979, T max = 0.988 10221 measured reflections 1391 independent reflections 887 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.131 S = 1.04 1391 reflections 144 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.18 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031340/xu5581sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031340/xu5581Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031340/xu5581Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2OF(000) = 424
Mr = 200.24Dx = 1.280 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6231 reflections
a = 6.3331 (4) Åθ = 3.3–27.4°
b = 10.6761 (9) ŵ = 0.08 mm1
c = 15.3714 (10) ÅT = 295 K
V = 1039.30 (13) Å3Prism, faint yellow
Z = 40.25 × 0.19 × 0.15 mm
Rigaku R-AXIS RAPID IP diffractometer1391 independent reflections
Radiation source: fine-focus sealed tube887 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
ω scanθmax = 27.4°, θmin = 3.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −8→8
Tmin = 0.979, Tmax = 0.988k = −13→13
10221 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0773P)2] where P = (Fo2 + 2Fc2)/3
1391 reflections(Δ/σ)max = 0.001
144 parametersΔρmax = 0.13 e Å3
2 restraintsΔρmin = −0.18 e Å3
xyzUiso*/Ueq
O10.6052 (3)0.1233 (2)0.18887 (14)0.0752 (7)
N10.8839 (3)0.0670 (2)0.06566 (14)0.0570 (6)
N21.1470 (4)0.1185 (3)0.16368 (15)0.0672 (8)
C10.8251 (6)0.0489 (3)−0.01804 (18)0.0672 (8)
H1A0.68820.0212−0.02860.081*
C20.9537 (6)0.0687 (3)−0.0877 (2)0.0762 (9)
H2A0.90690.0534−0.14410.091*
C31.1575 (6)0.1126 (3)−0.0720 (2)0.0706 (9)
H31.24830.1294−0.11810.085*
C41.2220 (5)0.1305 (3)0.01124 (19)0.0636 (8)
H41.35730.16000.02270.076*
C51.0823 (4)0.1041 (3)0.08020 (17)0.0542 (7)
C61.0371 (5)0.0617 (3)0.23756 (18)0.0652 (8)
H6A1.14140.02690.27690.078*
H6B0.9513−0.00710.21630.078*
C70.8978 (4)0.1498 (3)0.28793 (17)0.0564 (7)
C80.9675 (5)0.2047 (3)0.36466 (18)0.0672 (9)
H81.10320.18720.38430.081*
C90.8415 (6)0.2848 (3)0.4129 (2)0.0761 (9)
H90.89110.31930.46450.091*
C100.6432 (6)0.3126 (3)0.3835 (2)0.0763 (10)
H100.55830.36730.41500.092*
C110.5680 (5)0.2601 (3)0.30782 (18)0.0692 (8)
H110.43340.28010.28810.083*
C120.6935 (4)0.1769 (3)0.26072 (17)0.0567 (7)
H10.694 (5)0.093 (4)0.153 (2)0.119 (17)*
H21.2851 (18)0.126 (4)0.167 (2)0.092 (11)*
U11U22U33U12U13U23
O10.0449 (10)0.1083 (19)0.0723 (13)−0.0019 (12)−0.0022 (11)−0.0175 (13)
N10.0441 (11)0.0614 (15)0.0655 (13)0.0003 (11)−0.0053 (11)−0.0049 (11)
N20.0426 (12)0.099 (2)0.0599 (14)−0.0044 (13)−0.0005 (11)−0.0014 (13)
C10.0658 (18)0.068 (2)0.0680 (18)−0.0014 (15)−0.0109 (16)−0.0112 (15)
C20.094 (2)0.073 (2)0.0620 (16)−0.001 (2)−0.0054 (19)−0.0145 (16)
C30.084 (2)0.064 (2)0.0638 (18)0.0032 (17)0.0141 (16)−0.0084 (14)
C40.0585 (16)0.0609 (19)0.0715 (19)−0.0017 (15)0.0113 (15)−0.0067 (14)
C50.0471 (14)0.0553 (17)0.0601 (14)0.0020 (13)0.0012 (13)−0.0030 (13)
C60.0544 (15)0.078 (2)0.0634 (16)0.0060 (15)−0.0075 (14)0.0105 (15)
C70.0471 (14)0.0667 (19)0.0555 (14)−0.0064 (13)0.0017 (13)0.0094 (13)
C80.0610 (17)0.082 (2)0.0581 (15)−0.0153 (17)−0.0026 (15)0.0086 (15)
C90.090 (2)0.077 (2)0.0616 (16)−0.022 (2)0.0027 (18)−0.0032 (17)
C100.087 (2)0.071 (2)0.0709 (18)−0.0049 (19)0.0184 (18)−0.0051 (16)
C110.0581 (16)0.078 (2)0.0713 (17)0.0046 (17)0.0107 (15)0.0055 (17)
C120.0497 (14)0.0644 (19)0.0561 (15)−0.0075 (13)0.0031 (13)−0.0002 (13)
O1—C121.364 (3)C4—H40.9300
O1—H10.851 (10)C6—C71.504 (4)
N1—C51.336 (4)C6—H6A0.9700
N1—C11.353 (3)C6—H6B0.9700
N2—C51.356 (3)C7—C81.389 (4)
N2—C61.464 (4)C7—C121.390 (4)
N2—H20.879 (10)C8—C91.384 (5)
C1—C21.362 (5)C8—H80.9300
C1—H1A0.9300C9—C101.367 (5)
C2—C31.395 (5)C9—H90.9300
C2—H2A0.9300C10—C111.377 (4)
C3—C41.357 (4)C10—H100.9300
C3—H30.9300C11—C121.394 (4)
C4—C51.409 (4)C11—H110.9300
C12—O1—H1114 (3)C7—C6—H6A108.6
C5—N1—C1117.4 (3)N2—C6—H6B108.6
C5—N2—C6122.9 (3)C7—C6—H6B108.6
C5—N2—H2111 (2)H6A—C6—H6B107.5
C6—N2—H2118 (2)C8—C7—C12117.6 (3)
N1—C1—C2124.1 (3)C8—C7—C6121.0 (3)
N1—C1—H1A118.0C12—C7—C6121.4 (3)
C2—C1—H1A118.0C9—C8—C7122.1 (3)
C1—C2—C3118.0 (3)C9—C8—H8118.9
C1—C2—H2A121.0C7—C8—H8118.9
C3—C2—H2A121.0C10—C9—C8119.1 (3)
C4—C3—C2119.3 (3)C10—C9—H9120.4
C4—C3—H3120.4C8—C9—H9120.4
C2—C3—H3120.4C9—C10—C11120.5 (3)
C3—C4—C5119.5 (3)C9—C10—H10119.7
C3—C4—H4120.2C11—C10—H10119.7
C5—C4—H4120.2C10—C11—C12120.1 (3)
N1—C5—N2118.4 (2)C10—C11—H11120.0
N1—C5—C4121.6 (3)C12—C11—H11120.0
N2—C5—C4120.0 (2)O1—C12—C7122.5 (3)
N2—C6—C7114.8 (3)O1—C12—C11117.0 (3)
N2—C6—H6A108.6C7—C12—C11120.5 (3)
C5—N1—C1—C2−1.4 (5)N2—C6—C7—C1282.9 (4)
N1—C1—C2—C3−1.3 (5)C12—C7—C8—C9−0.6 (4)
C1—C2—C3—C41.8 (5)C6—C7—C8—C9−179.1 (3)
C2—C3—C4—C50.2 (5)C7—C8—C9—C10−1.1 (5)
C1—N1—C5—N2−177.7 (3)C8—C9—C10—C111.1 (5)
C1—N1—C5—C43.6 (4)C9—C10—C11—C120.6 (5)
C6—N2—C5—N118.7 (5)C8—C7—C12—O1−176.6 (3)
C6—N2—C5—C4−162.5 (3)C6—C7—C12—O11.9 (4)
C3—C4—C5—N1−3.0 (5)C8—C7—C12—C112.3 (4)
C3—C4—C5—N2178.2 (3)C6—C7—C12—C11−179.2 (3)
C5—N2—C6—C7−101.6 (3)C10—C11—C12—O1176.6 (3)
N2—C6—C7—C8−98.6 (3)C10—C11—C12—C7−2.3 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.85 (1)1.83 (2)2.658 (3)166 (5)
N2—H2···O1i0.88 (1)2.06 (1)2.928 (3)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.85 (1)1.83 (2)2.658 (3)166 (5)
N2—H2⋯O1i 0.88 (1)2.06 (1)2.928 (3)172 (3)

Symmetry code: (i) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(Pyridin-3-yl-amino)-meth-yl]phenol.

Authors:  Jing Xu; Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12

3.  2-{[(Pyrazin-2-yl)amino]-meth-yl}phenol.

Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
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