Literature DB >> 22904914

2-{[(Pyrazin-2-yl)amino]-meth-yl}phenol.

Shan Gao, Seik Weng Ng.   

Abstract

The two aromatic rings of the title compound, C(11)H(11)N(3)O, are nearly perpendicular to one another, with a dihedral angle between their planes of 80.52 (18)°. In the crystal, the amino N atom is a hydrogen-bond donor to the pyrazine N(1) atom of an inversion-related mol-ecule and the hy-droxy O atom is a hydrogen-bond donor to the pyrazine N(4) atom of another mol-ecule. The two hydrogen bonds lead to the formation of a helical chain that runs along the b axis.

Entities:  

Year:  2012        PMID: 22904914      PMCID: PMC3414927          DOI: 10.1107/S1600536812031339

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the related compound 2-(anilinometh­yl)phenol, see: Qu et al. (2007 ▶).

Experimental

Crystal data

C11H11N3O M = 201.23 Monoclinic, a = 9.7021 (14) Å b = 13.0937 (17) Å c = 7.8806 (13) Å β = 95.746 (5)° V = 996.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.26 × 0.22 × 0.17 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.977, T max = 0.985 7686 measured reflections 1751 independent reflections 858 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.191 S = 1.06 1751 reflections 144 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031339/xu5580sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031339/xu5580Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031339/xu5580Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11N3OF(000) = 424
Mr = 201.23Dx = 1.342 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3450 reflections
a = 9.7021 (14) Åθ = 3.0–27.5°
b = 13.0937 (17) ŵ = 0.09 mm1
c = 7.8806 (13) ÅT = 295 K
β = 95.746 (5)°Prism, colorless
V = 996.1 (3) Å30.26 × 0.22 × 0.17 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer1751 independent reflections
Radiation source: fine-focus sealed tube858 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.079
ω scanθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −11→11
Tmin = 0.977, Tmax = 0.985k = −15→15
7686 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.191H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0862P)2 + 0.1018P] where P = (Fo2 + 2Fc2)/3
1751 reflections(Δ/σ)max = 0.001
144 parametersΔρmax = 0.18 e Å3
2 restraintsΔρmin = −0.20 e Å3
xyzUiso*/Ueq
O1−0.0468 (3)0.63270 (19)0.2017 (3)0.0656 (8)
N10.4697 (3)0.3661 (2)0.0705 (4)0.0578 (8)
N20.2758 (3)0.2358 (2)0.1926 (4)0.0691 (9)
N30.3227 (3)0.5014 (2)0.0842 (4)0.0654 (9)
C10.4925 (4)0.2662 (3)0.0949 (5)0.0684 (11)
H1A0.57720.23960.07070.082*
C20.3983 (4)0.2013 (3)0.1530 (5)0.0724 (12)
H20.41930.13220.16540.087*
C30.2500 (4)0.3333 (3)0.1698 (5)0.0650 (10)
H3A0.16510.35890.19530.078*
C40.3470 (3)0.4010 (3)0.1077 (4)0.0530 (9)
C50.1935 (4)0.5509 (3)0.1131 (5)0.0642 (10)
H5A0.11760.50810.06580.077*
H5B0.18750.61490.05080.077*
C60.1742 (3)0.5727 (2)0.2970 (5)0.0521 (9)
C70.2751 (4)0.5529 (3)0.4289 (5)0.0649 (11)
H70.35770.52260.40510.078*
C80.2562 (5)0.5771 (3)0.5957 (6)0.0791 (13)
H80.32410.56200.68390.095*
C90.1347 (5)0.6239 (3)0.6285 (5)0.0824 (13)
H90.12180.64270.73960.099*
C100.0329 (4)0.6431 (3)0.5000 (5)0.0697 (11)
H10−0.04940.67370.52420.084*
C110.0521 (4)0.6171 (2)0.3347 (5)0.0524 (9)
H1−0.116 (2)0.661 (2)0.239 (5)0.077 (13)*
H30.388 (3)0.538 (2)0.040 (4)0.070 (12)*
U11U22U33U12U13U23
O10.0572 (17)0.0852 (18)0.0555 (17)0.0224 (13)0.0117 (14)−0.0003 (13)
N10.0494 (18)0.0610 (19)0.065 (2)0.0002 (13)0.0146 (15)0.0000 (15)
N20.071 (2)0.071 (2)0.065 (2)−0.0179 (17)0.0064 (19)0.0054 (16)
N30.054 (2)0.066 (2)0.080 (2)0.0043 (16)0.0281 (18)0.0083 (17)
C10.060 (2)0.069 (3)0.078 (3)0.0030 (19)0.015 (2)−0.002 (2)
C20.074 (3)0.066 (2)0.078 (3)−0.004 (2)0.010 (2)0.004 (2)
C30.051 (2)0.082 (3)0.064 (3)−0.0058 (19)0.017 (2)0.004 (2)
C40.046 (2)0.066 (2)0.048 (2)−0.0072 (16)0.0078 (17)−0.0019 (17)
C50.054 (2)0.077 (2)0.064 (3)0.0078 (18)0.016 (2)0.0054 (19)
C60.051 (2)0.0549 (19)0.051 (2)−0.0027 (16)0.0072 (18)0.0043 (16)
C70.055 (2)0.071 (2)0.068 (3)−0.0020 (18)0.001 (2)0.001 (2)
C80.087 (3)0.084 (3)0.063 (3)−0.006 (2)−0.015 (3)0.004 (2)
C90.112 (4)0.087 (3)0.049 (3)0.007 (3)0.008 (3)−0.012 (2)
C100.084 (3)0.077 (3)0.050 (3)0.016 (2)0.017 (2)−0.001 (2)
C110.058 (2)0.051 (2)0.049 (2)0.0017 (16)0.0087 (19)0.0025 (16)
O1—C111.363 (4)C5—C61.507 (5)
O1—H10.844 (10)C5—H5A0.9700
N1—C41.336 (4)C5—H5B0.9700
N1—C11.337 (4)C6—C71.379 (5)
N2—C31.311 (4)C6—C111.379 (5)
N2—C21.337 (4)C7—C81.382 (5)
N3—C41.345 (4)C7—H70.9300
N3—C51.449 (4)C8—C91.375 (6)
N3—H30.888 (10)C8—H80.9300
C1—C21.361 (5)C9—C101.365 (5)
C1—H1A0.9300C9—H90.9300
C2—H20.9300C10—C111.377 (5)
C3—C41.415 (5)C10—H100.9300
C3—H3A0.9300
C11—O1—H1109 (3)N3—C5—H5B108.4
C4—N1—C1116.2 (3)C6—C5—H5B108.4
C3—N2—C2117.3 (3)H5A—C5—H5B107.5
C4—N3—C5123.9 (3)C7—C6—C11118.5 (3)
C4—N3—H3117 (2)C7—C6—C5122.8 (3)
C5—N3—H3119 (2)C11—C6—C5118.6 (3)
N1—C1—C2123.6 (3)C6—C7—C8121.4 (4)
N1—C1—H1A118.2C6—C7—H7119.3
C2—C1—H1A118.2C8—C7—H7119.3
N2—C2—C1120.7 (4)C9—C8—C7118.6 (4)
N2—C2—H2119.7C9—C8—H8120.7
C1—C2—H2119.7C7—C8—H8120.7
N2—C3—C4122.3 (3)C10—C9—C8120.9 (4)
N2—C3—H3A118.9C10—C9—H9119.6
C4—C3—H3A118.9C8—C9—H9119.6
N1—C4—N3116.9 (3)C9—C10—C11120.0 (4)
N1—C4—C3120.0 (3)C9—C10—H10120.0
N3—C4—C3123.2 (3)C11—C10—H10120.0
N3—C5—C6115.4 (3)O1—C11—C10122.6 (3)
N3—C5—H5A108.4O1—C11—C6116.8 (3)
C6—C5—H5A108.4C10—C11—C6120.5 (4)
C4—N1—C1—C20.4 (6)N3—C5—C6—C11−178.2 (3)
C3—N2—C2—C11.3 (6)C11—C6—C7—C8−0.4 (5)
N1—C1—C2—N2−1.2 (7)C5—C6—C7—C8177.7 (3)
C2—N2—C3—C4−0.7 (6)C6—C7—C8—C9−1.4 (6)
C1—N1—C4—N3179.9 (3)C7—C8—C9—C102.2 (6)
C1—N1—C4—C30.2 (5)C8—C9—C10—C11−1.2 (6)
C5—N3—C4—N1177.9 (3)C9—C10—C11—O1178.8 (3)
C5—N3—C4—C3−2.5 (6)C9—C10—C11—C6−0.7 (6)
N2—C3—C4—N1−0.1 (6)C7—C6—C11—O1−178.0 (3)
N2—C3—C4—N3−179.7 (4)C5—C6—C11—O13.8 (4)
C4—N3—C5—C678.5 (5)C7—C6—C11—C101.4 (5)
N3—C5—C6—C73.7 (5)C5—C6—C11—C10−176.7 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N2i0.84 (1)1.96 (1)2.796 (4)174 (4)
N3—H3···N1ii0.89 (1)2.12 (1)3.007 (4)175 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N2i 0.84 (1)1.96 (1)2.796 (4)174 (4)
N3—H3⋯N1ii 0.89 (1)2.12 (1)3.007 (4)175 (3)

Symmetry codes: (i) ; (ii) .

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