Literature DB >> 22199768

2-[(Pyridin-3-yl-amino)-meth-yl]phenol.

Jing Xu, Shan Gao, Seik Weng Ng.   

Abstract

In the title compound, C(12)H(12)N(2)O, the aromatic rings at either ends of the -CH(2)-n class="Chemical">NH- link are twisted by 68.79 (7)°. In the crystal, the hy-droxy substituent is a hydrogen-bond donor to the N atom of the pyridine ring of an adjacent mol-ecule, and the hydrogen bond generates a chain along the b axis; it is also a hydrogen-bond acceptor to the amino group of another adjacent mol-ecule. The two hydrogen bonds lead to the formation of a layer structure.

Entities:  

Year:  2011        PMID: 22199768      PMCID: PMC3238919          DOI: 10.1107/S160053681104685X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the N-salicyl­idene-3-aminn class="Chemical">pyridine precursor, see: Csaszar (1990 ▶); Kaya & Guelel (2005 ▶); Robert et al. (2009 ▶). For a related structure, see: Xu et al. (2011 ▶).

Experimental

Crystal data

C12H12N2O M = 200.24 Monoclinic, a = 5.8386 (11) Å b = 13.399 (3) Å c = 13.169 (3) Å β = 90.519 (6)° V = 1030.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.21 × 0.12 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.983, T max = 0.990 9845 measured reflections 2358 independent reflections 1879 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.137 S = 1.08 2358 reflections 144 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104685X/xu5384sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104685X/xu5384Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681104685X/xu5384Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2OF(000) = 424
Mr = 200.24Dx = 1.291 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5377 reflections
a = 5.8386 (11) Åθ = 3.0–27.5°
b = 13.399 (3) ŵ = 0.08 mm1
c = 13.169 (3) ÅT = 293 K
β = 90.519 (6)°Prism, colorless
V = 1030.1 (4) Å30.21 × 0.12 × 0.12 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer2358 independent reflections
Radiation source: fine-focus sealed tube1879 reflections with I > 2σ(I)
graphiteRint = 0.042
ω scanθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→7
Tmin = 0.983, Tmax = 0.990k = −17→17
9845 measured reflectionsl = −17→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0752P)2 + 0.0952P] where P = (Fo2 + 2Fc2)/3
2358 reflections(Δ/σ)max = 0.001
144 parametersΔρmax = 0.26 e Å3
2 restraintsΔρmin = −0.18 e Å3
xyzUiso*/Ueq
O11.17862 (17)0.30493 (7)0.38420 (7)0.0517 (3)
H1O1.249 (3)0.2486 (9)0.3790 (12)0.073 (5)*
N10.6391 (2)0.42170 (9)0.32008 (9)0.0512 (3)
H1N0.534 (2)0.3813 (10)0.3444 (11)0.059 (4)*
N20.61025 (18)0.63154 (8)0.14353 (8)0.0493 (3)
C11.0374 (2)0.30367 (9)0.46539 (9)0.0396 (3)
C21.0673 (2)0.23629 (11)0.54458 (10)0.0499 (3)
H21.18820.19110.54290.060*
C30.9202 (3)0.23577 (13)0.62516 (10)0.0591 (4)
H30.94070.18970.67730.071*
C40.7428 (3)0.30289 (14)0.62928 (11)0.0669 (5)
H40.64180.30220.68350.080*
C50.7166 (3)0.37110 (12)0.55208 (11)0.0597 (4)
H50.59820.41730.55570.072*
C60.8605 (2)0.37334 (9)0.46929 (9)0.0431 (3)
C70.8270 (2)0.44915 (10)0.38681 (11)0.0484 (3)
H7A0.79610.51380.41690.058*
H7B0.96640.45470.34770.058*
C80.5640 (2)0.48446 (9)0.24474 (9)0.0416 (3)
C90.6833 (2)0.57012 (10)0.21638 (10)0.0449 (3)
H90.82000.58500.24990.054*
C100.4163 (2)0.61131 (11)0.09441 (11)0.0545 (4)
H100.36590.65430.04340.065*
C110.2877 (2)0.52808 (12)0.11717 (11)0.0586 (4)
H110.15220.51520.08190.070*
C120.3611 (2)0.46471 (11)0.19197 (10)0.0528 (4)
H120.27550.40830.20770.063*
U11U22U33U12U13U23
O10.0596 (6)0.0440 (5)0.0517 (6)0.0094 (4)0.0165 (5)0.0042 (4)
N10.0588 (7)0.0428 (6)0.0519 (6)−0.0104 (5)−0.0083 (5)0.0094 (5)
N20.0515 (6)0.0442 (6)0.0522 (6)−0.0019 (5)0.0093 (5)0.0090 (5)
C10.0424 (6)0.0385 (6)0.0380 (6)0.0015 (5)0.0016 (5)−0.0046 (5)
C20.0494 (7)0.0527 (8)0.0476 (7)0.0131 (6)0.0022 (6)0.0037 (6)
C30.0645 (9)0.0721 (10)0.0408 (7)0.0146 (7)0.0030 (6)0.0107 (6)
C40.0663 (9)0.0880 (12)0.0467 (8)0.0213 (8)0.0168 (7)0.0033 (7)
C50.0570 (8)0.0670 (10)0.0551 (8)0.0241 (7)0.0097 (7)−0.0013 (7)
C60.0448 (6)0.0413 (7)0.0432 (6)0.0053 (5)−0.0032 (5)−0.0040 (5)
C70.0465 (7)0.0396 (7)0.0589 (8)0.0025 (5)−0.0045 (6)0.0019 (6)
C80.0473 (6)0.0377 (6)0.0400 (6)−0.0011 (5)0.0038 (5)−0.0009 (5)
C90.0403 (6)0.0434 (7)0.0511 (7)−0.0022 (5)0.0045 (5)0.0029 (5)
C100.0592 (8)0.0578 (8)0.0465 (7)0.0034 (6)0.0008 (6)0.0120 (6)
C110.0558 (8)0.0701 (10)0.0498 (8)−0.0095 (7)−0.0094 (6)0.0057 (7)
C120.0584 (8)0.0518 (8)0.0481 (7)−0.0169 (6)−0.0026 (6)0.0037 (6)
O1—C11.3562 (15)C4—H40.9300
O1—H1O0.86 (1)C5—C61.383 (2)
N1—C81.3695 (16)C5—H50.9300
N1—C71.4472 (17)C6—C71.4986 (17)
N1—H1N0.88 (1)C7—H7A0.9700
N2—C101.3269 (18)C7—H7B0.9700
N2—C91.3312 (16)C8—C121.3936 (18)
C1—C21.3892 (18)C8—C91.3953 (18)
C1—C61.3933 (17)C9—H90.9300
C2—C31.371 (2)C10—C111.379 (2)
C2—H20.9300C10—H100.9300
C3—C41.373 (2)C11—C121.366 (2)
C3—H30.9300C11—H110.9300
C4—C51.374 (2)C12—H120.9300
C1—O1—H1O110.3 (12)C1—C6—C7121.29 (12)
C8—N1—C7121.31 (11)N1—C7—C6111.17 (11)
C8—N1—H1N114.9 (10)N1—C7—H7A109.4
C7—N1—H1N117.6 (10)C6—C7—H7A109.4
C10—N2—C9119.43 (11)N1—C7—H7B109.4
O1—C1—C2121.78 (11)C6—C7—H7B109.4
O1—C1—C6118.47 (11)H7A—C7—H7B108.0
C2—C1—C6119.73 (12)N1—C8—C12120.65 (11)
C3—C2—C1120.58 (12)N1—C8—C9122.81 (11)
C3—C2—H2119.7C12—C8—C9116.54 (12)
C1—C2—H2119.7N2—C9—C8122.96 (12)
C2—C3—C4120.35 (13)N2—C9—H9118.5
C2—C3—H3119.8C8—C9—H9118.5
C4—C3—H3119.8N2—C10—C11121.55 (12)
C3—C4—C5119.01 (14)N2—C10—H10119.2
C3—C4—H4120.5C11—C10—H10119.2
C5—C4—H4120.5C12—C11—C10119.44 (13)
C4—C5—C6122.24 (13)C12—C11—H11120.3
C4—C5—H5118.9C10—C11—H11120.3
C6—C5—H5118.9C11—C12—C8120.07 (12)
C5—C6—C1118.05 (12)C11—C12—H12120.0
C5—C6—C7120.66 (11)C8—C12—H12120.0
O1—C1—C2—C3−179.14 (13)C5—C6—C7—N1−77.50 (16)
C6—C1—C2—C31.9 (2)C1—C6—C7—N1102.91 (14)
C1—C2—C3—C4−0.9 (2)C7—N1—C8—C12−169.54 (13)
C2—C3—C4—C5−0.7 (3)C7—N1—C8—C910.6 (2)
C3—C4—C5—C61.2 (3)C10—N2—C9—C8−0.4 (2)
C4—C5—C6—C1−0.2 (2)N1—C8—C9—N2−179.66 (12)
C4—C5—C6—C7−179.76 (14)C12—C8—C9—N20.5 (2)
O1—C1—C6—C5179.63 (12)C9—N2—C10—C110.2 (2)
C2—C1—C6—C5−1.41 (19)N2—C10—C11—C120.0 (2)
O1—C1—C6—C7−0.77 (17)C10—C11—C12—C80.1 (2)
C2—C1—C6—C7178.19 (11)N1—C8—C12—C11179.81 (14)
C8—N1—C7—C6174.01 (12)C9—C8—C12—C11−0.3 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N2i0.862 (14)1.797 (14)2.6568 (16)175.0 (16)
N1—H1n···O1ii0.881 (13)2.376 (12)3.2296 (17)163.2 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N2i0.86 (1)1.80 (1)2.6568 (16)175 (2)
N1—H1n⋯O1ii0.88 (1)2.38 (1)3.2296 (17)163 (1)

Symmetry codes: (i) ; (ii) .

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3.  2-[(Pyrimidin-2-yl-amino)-meth-yl]phenol.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12
  3 in total
  3 in total

1.  2-[(Pyrimidin-2-yl-amino)-meth-yl]phenol.

Authors:  Jing Xu; Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12

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Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
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