Literature DB >> 22904868

3-(2-Methyl-amino-1,3-thia-zol-4-yl)-2H-chromen-2-one.

Samina Khan Yusufzai, Hasnah Osman, Aisyah Saad Abdul Rahim, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the title compound, C(13)H(10)N(2)O(2)S, the essentially planar 2H-chromene ring system [maximum deviation = 0.0297 (13) Å] and the thia-zole ring [maximum deviation = 0.0062 (11) Å] form a dihedral angle of 3.47 (5)°. In the crystal, N-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into two-dimensional networks parallel to the bc plane. C-H⋯π and π-π [centroid-centroid separation = 3.6796 (8) Å] inter-actions further stabilize the crystal structure.

Entities:  

Year:  2012        PMID: 22904868      PMCID: PMC3414335          DOI: 10.1107/S1600536812030140

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of coumarin derivatives, see: Soine (1964 ▶); Wattenberg et al. (1979 ▶); Jung et al. (1999 ▶); Rao et al. (1981 ▶). For a related structure, see: Arshad et al. (2010 ▶, 2011 ▶); Asad et al. (2011 ▶); Yusufzai, Osman, Sulaiman et al. (2012 ▶); Yusufzai, Osman, Abdul Rahim et al. (2012 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H10N2O2S M = 258.29 Monoclinic, a = 14.5460 (3) Å b = 4.9289 (1) Å c = 18.3516 (3) Å β = 120.307 (1)° V = 1135.92 (4) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 100 K 0.47 × 0.40 × 0.20 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.881, T max = 0.946 13265 measured reflections 3303 independent reflections 2851 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.095 S = 1.05 3303 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030140/rz2775sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030140/rz2775Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812030140/rz2775Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10N2O2SF(000) = 536
Mr = 258.29Dx = 1.510 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7338 reflections
a = 14.5460 (3) Åθ = 2.6–32.5°
b = 4.9289 (1) ŵ = 0.28 mm1
c = 18.3516 (3) ÅT = 100 K
β = 120.307 (1)°Block, orange
V = 1135.92 (4) Å30.47 × 0.40 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3303 independent reflections
Radiation source: fine-focus sealed tube2851 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→16
Tmin = 0.881, Tmax = 0.946k = −6→6
13265 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0472P)2 + 0.5573P] where P = (Fo2 + 2Fc2)/3
3303 reflections(Δ/σ)max = 0.001
168 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.86394 (2)0.35198 (6)0.510226 (18)0.01927 (9)
O10.59607 (7)1.21689 (19)0.55233 (5)0.02025 (19)
O20.62018 (7)1.0170 (2)0.45629 (6)0.0226 (2)
N10.87142 (8)0.5208 (2)0.64688 (6)0.0167 (2)
N20.99500 (9)0.1750 (2)0.66837 (7)0.0209 (2)
C10.61748 (9)1.2526 (3)0.63378 (7)0.0174 (2)
C20.56079 (10)1.4526 (3)0.64782 (8)0.0215 (2)
H2A0.50901.55940.60260.026*
C30.58198 (10)1.4917 (3)0.72954 (9)0.0223 (3)
H3A0.54471.62880.74050.027*
C40.65730 (10)1.3329 (3)0.79635 (8)0.0220 (3)
H4A0.67071.36180.85200.026*
C50.71206 (10)1.1340 (3)0.78079 (8)0.0207 (2)
H5A0.76261.02450.82590.025*
C60.69360 (9)1.0923 (3)0.69871 (7)0.0170 (2)
C70.74892 (9)0.8943 (2)0.67830 (7)0.0172 (2)
H7A0.80000.78120.72190.021*
C80.73070 (9)0.8631 (2)0.59846 (7)0.0157 (2)
C90.64806 (9)1.0288 (3)0.53044 (7)0.0175 (2)
C100.79048 (9)0.6641 (2)0.57920 (7)0.0159 (2)
C110.77572 (10)0.6015 (3)0.50172 (7)0.0188 (2)
H11A0.72420.68340.45030.023*
C120.91583 (9)0.3476 (2)0.61957 (7)0.0167 (2)
C131.04154 (10)−0.0065 (3)0.63373 (8)0.0228 (3)
H13A1.0934−0.12500.67850.034*
H13B1.07730.09990.61010.034*
H13C0.9854−0.11710.58910.034*
H1N21.0201 (16)0.177 (4)0.7226 (13)0.040 (5)*
U11U22U33U12U13U23
S10.01899 (15)0.02255 (16)0.01429 (14)0.00258 (11)0.00693 (11)−0.00217 (10)
O10.0194 (4)0.0245 (4)0.0164 (4)0.0064 (3)0.0087 (3)0.0043 (3)
O20.0213 (4)0.0301 (5)0.0154 (4)0.0051 (4)0.0085 (3)0.0045 (4)
N10.0147 (4)0.0188 (5)0.0143 (4)0.0008 (4)0.0056 (4)0.0000 (4)
N20.0185 (5)0.0242 (5)0.0156 (5)0.0060 (4)0.0054 (4)−0.0004 (4)
C10.0162 (5)0.0193 (5)0.0171 (5)−0.0007 (4)0.0087 (4)0.0005 (4)
C20.0183 (5)0.0208 (6)0.0254 (6)0.0035 (5)0.0110 (5)0.0022 (5)
C30.0199 (6)0.0215 (6)0.0296 (6)−0.0006 (5)0.0155 (5)−0.0035 (5)
C40.0196 (6)0.0268 (6)0.0212 (6)−0.0020 (5)0.0114 (5)−0.0054 (5)
C50.0168 (5)0.0266 (6)0.0172 (5)0.0008 (5)0.0075 (4)−0.0012 (5)
C60.0136 (5)0.0193 (5)0.0171 (5)−0.0009 (4)0.0070 (4)−0.0010 (4)
C70.0148 (5)0.0197 (5)0.0149 (5)0.0019 (4)0.0058 (4)0.0007 (4)
C80.0137 (5)0.0168 (5)0.0154 (5)−0.0001 (4)0.0064 (4)0.0011 (4)
C90.0151 (5)0.0196 (5)0.0177 (5)0.0008 (4)0.0082 (4)0.0017 (4)
C100.0138 (5)0.0173 (5)0.0149 (5)−0.0002 (4)0.0061 (4)0.0001 (4)
C110.0181 (5)0.0208 (6)0.0154 (5)0.0029 (4)0.0068 (4)0.0000 (4)
C120.0145 (5)0.0183 (5)0.0151 (5)−0.0017 (4)0.0058 (4)−0.0014 (4)
C130.0191 (5)0.0237 (6)0.0235 (6)0.0037 (5)0.0092 (5)−0.0028 (5)
S1—C111.7265 (13)C3—H3A0.9500
S1—C121.7517 (12)C4—C51.3807 (17)
O1—C11.3757 (14)C4—H4A0.9500
O1—C91.3781 (15)C5—C61.4054 (16)
O2—C91.2094 (15)C5—H5A0.9500
N1—C121.3129 (15)C6—C71.4296 (16)
N1—C101.3971 (15)C7—C81.3598 (16)
N2—C121.3457 (16)C7—H7A0.9500
N2—C131.4482 (16)C8—C101.4674 (16)
N2—H1N20.87 (2)C8—C91.4683 (16)
C1—C21.3903 (17)C10—C111.3621 (16)
C1—C61.3923 (16)C11—H11A0.9500
C2—C31.3838 (18)C13—H13A0.9800
C2—H2A0.9500C13—H13B0.9800
C3—C41.4001 (19)C13—H13C0.9800
C11—S1—C1289.04 (6)C8—C7—C6122.02 (11)
C1—O1—C9123.10 (9)C8—C7—H7A119.0
C12—N1—C10110.22 (10)C6—C7—H7A119.0
C12—N2—C13122.07 (11)C7—C8—C10121.21 (10)
C12—N2—H1N2118.6 (13)C7—C8—C9118.93 (11)
C13—N2—H1N2119.3 (13)C10—C8—C9119.84 (10)
O1—C1—C2117.51 (11)O2—C9—O1116.01 (11)
O1—C1—C6120.24 (11)O2—C9—C8126.56 (11)
C2—C1—C6122.25 (11)O1—C9—C8117.43 (10)
C3—C2—C1118.10 (12)C11—C10—N1115.57 (11)
C3—C2—H2A121.0C11—C10—C8127.05 (11)
C1—C2—H2A121.0N1—C10—C8117.38 (10)
C2—C3—C4121.28 (12)C10—C11—S1110.40 (9)
C2—C3—H3A119.4C10—C11—H11A124.8
C4—C3—H3A119.4S1—C11—H11A124.8
C5—C4—C3119.60 (12)N1—C12—N2125.28 (11)
C5—C4—H4A120.2N1—C12—S1114.75 (9)
C3—C4—H4A120.2N2—C12—S1119.97 (9)
C4—C5—C6120.49 (12)N2—C13—H13A109.5
C4—C5—H5A119.8N2—C13—H13B109.5
C6—C5—H5A119.8H13A—C13—H13B109.5
C1—C6—C5118.27 (11)N2—C13—H13C109.5
C1—C6—C7118.21 (11)H13A—C13—H13C109.5
C5—C6—C7123.52 (11)H13B—C13—H13C109.5
C9—O1—C1—C2178.87 (11)C7—C8—C9—O2−177.09 (12)
C9—O1—C1—C6−0.99 (17)C10—C8—C9—O21.73 (19)
O1—C1—C2—C3−179.64 (11)C7—C8—C9—O12.65 (16)
C6—C1—C2—C30.21 (19)C10—C8—C9—O1−178.53 (10)
C1—C2—C3—C4−0.76 (19)C12—N1—C10—C11−1.08 (15)
C2—C3—C4—C50.3 (2)C12—N1—C10—C8178.73 (10)
C3—C4—C5—C60.75 (19)C7—C8—C10—C11175.76 (12)
O1—C1—C6—C5−179.36 (11)C9—C8—C10—C11−3.03 (19)
C2—C1—C6—C50.79 (18)C7—C8—C10—N1−4.03 (17)
O1—C1—C6—C70.75 (17)C9—C8—C10—N1177.18 (10)
C2—C1—C6—C7−179.10 (11)N1—C10—C11—S10.53 (14)
C4—C5—C6—C1−1.27 (18)C8—C10—C11—S1−179.26 (10)
C4—C5—C6—C7178.62 (12)C12—S1—C11—C100.09 (10)
C1—C6—C7—C81.30 (18)C10—N1—C12—N2−178.77 (12)
C5—C6—C7—C8−178.59 (12)C10—N1—C12—S11.14 (13)
C6—C7—C8—C10178.23 (11)C13—N2—C12—N1−178.67 (12)
C6—C7—C8—C9−2.98 (18)C13—N2—C12—S11.43 (17)
C1—O1—C9—O2179.07 (11)C11—S1—C12—N1−0.74 (10)
C1—O1—C9—C8−0.70 (16)C11—S1—C12—N2179.17 (11)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···N1i0.87 (2)2.24 (2)3.0331 (15)152 (2)
C4—H4A···O2ii0.952.443.3247 (16)154
C13—H13C···Cg1iii0.982.703.5026 (16)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1/N1/C10–C12 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯N1i 0.87 (2)2.24 (2)3.0331 (15)152 (2)
C4—H4A⋯O2ii 0.952.443.3247 (16)154
C13—H13CCg1iii 0.982.703.5026 (16)139

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

1.  Inhibition of chemical carcinogen-induced neoplasia by coumarins and alpha-angelicalactone.

Authors:  L W Wattenberg; L K Lam; A V Fladmoe
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21

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