Literature DB >> 22902701

Thermoplasticity in the plant circadian clock: how plants tell the time-perature.

Allan B James1, Naeem Hasan Syed, John W S Brown, Hugh G Nimmo.   

Abstract

In the March 2012 issue of The Plant Cell we describe extensive alternative splicing (AS) of Arabidopsis circadian clock genes. Notably these distinct post-transcriptional events associate with different steady-state temperatures and also with plants undergoing temperature transitions leading us to propose that temperature-associated AS is an additional mechanism involved in the operation and control of the plant circadian clock. Here we show that temperature associated AS also extends to REVEILLE 8 (RVE8), demonstrating a hitherto unrecognized link between the expression of this clock associated gene and temperature. Finally we discuss our observations of the plastic nature of clock gene expression at the post-transcriptional level in the context of the ongoing fascination of how plants respond to temperature.

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Year:  2012        PMID: 22902701      PMCID: PMC3493400          DOI: 10.4161/psb.21491

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  37 in total

1.  Circadian clock components regulate entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees.

Authors:  Cristian Ibáñez; Iwanka Kozarewa; Mikael Johansson; Erling Ogren; Antje Rohde; Maria E Eriksson
Journal:  Plant Physiol       Date:  2010-06-08       Impact factor: 8.340

Review 2.  Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged.

Authors:  Kemal Kazan
Journal:  Trends Plant Sci       Date:  2003-10       Impact factor: 18.313

Review 3.  The circadian system in higher plants.

Authors:  Stacey L Harmer
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

Review 4.  Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors.

Authors:  Pamela Nicholson; Hasmik Yepiskoposyan; Stefanie Metze; Rodolfo Zamudio Orozco; Nicole Kleinschmidt; Oliver Mühlemann
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

5.  A role for circadian evening elements in cold-regulated gene expression in Arabidopsis.

Authors:  Michael D Mikkelsen; Michael F Thomashow
Journal:  Plant J       Date:  2009-06-30       Impact factor: 6.417

6.  A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.

Authors:  Pil Joon Seo; Mi-Jeong Park; Mi-Hye Lim; Sang-Gyu Kim; Minyoung Lee; Ian T Baldwin; Chung-Mo Park
Journal:  Plant Cell       Date:  2012-06-19       Impact factor: 11.277

7.  Conserved alternative splicing of Arabidopsis transthyretin-like determines protein localization and S-allantoin synthesis in peroxisomes.

Authors:  Ilaria Lamberto; Riccardo Percudani; Rita Gatti; Claudia Folli; Stefania Petrucco
Journal:  Plant Cell       Date:  2010-05-28       Impact factor: 11.277

8.  Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Authors:  Sergei A Filichkin; Henry D Priest; Scott A Givan; Rongkun Shen; Douglas W Bryant; Samuel E Fox; Weng-Keen Wong; Todd C Mockler
Journal:  Genome Res       Date:  2009-10-26       Impact factor: 9.043

9.  Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.

Authors:  Allan B James; Naeem Hasan Syed; Simon Bordage; Jacqueline Marshall; Gillian A Nimmo; Gareth I Jenkins; Pawel Herzyk; John W S Brown; Hugh G Nimmo
Journal:  Plant Cell       Date:  2012-03-09       Impact factor: 11.277

Review 10.  Alternative splicing in plants--coming of age.

Authors:  Naeem H Syed; Maria Kalyna; Yamile Marquez; Andrea Barta; John W S Brown
Journal:  Trends Plant Sci       Date:  2012-06-27       Impact factor: 18.313

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  17 in total

Review 1.  Alternative splicing at the intersection of biological timing, development, and stress responses.

Authors:  Dorothee Staiger; John W S Brown
Journal:  Plant Cell       Date:  2013-10-31       Impact factor: 11.277

2.  Identification of two novel chicken GPR133 variants and their expression in different tissues.

Authors:  Kai Tian; Qihai Xiao; Xueyou Zhang; Xi Lan; Xiaoling Zhao; Yan Wang; Diyan Li; Huadong Yin; Lin Ye; Qing Zhu
Journal:  Funct Integr Genomics       Date:  2017-06-14       Impact factor: 3.410

3.  Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana.

Authors:  Corinna Streitner; Craig G Simpson; Paul Shaw; Selahattin Danisman; John W S Brown; Dorothee Staiger
Journal:  Plant Signal Behav       Date:  2013-05-10

4.  Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation.

Authors:  M C Rodriguez Gallo; Q Li; M Devang; R G Uhrig
Journal:  BMC Plant Biol       Date:  2022-10-22       Impact factor: 5.260

Review 5.  Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs.

Authors:  Osnat Bartok; Charalambos P Kyriacou; Joel Levine; Amita Sehgal; Sebastian Kadener
Journal:  Proc Biol Sci       Date:  2013-07-03       Impact factor: 5.349

Review 6.  Circadian rhythms and post-transcriptional regulation in higher plants.

Authors:  Andrés Romanowski; Marcelo J Yanovsky
Journal:  Front Plant Sci       Date:  2015-06-12       Impact factor: 5.753

7.  Phytochrome A elevates plant circadian-clock components to suppress shade avoidance in deep-canopy shade.

Authors:  Donald P Fraser; Paige E Panter; Ashutosh Sharma; Bhavana Sharma; Antony N Dodd; Keara A Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 11.205

8.  MAF2 Is Regulated by Temperature-Dependent Splicing and Represses Flowering at Low Temperatures in Parallel with FLM.

Authors:  Chiara A Airoldi; Mary McKay; Brendan Davies
Journal:  PLoS One       Date:  2015-05-08       Impact factor: 3.240

9.  Alternative Splicing of Barley Clock Genes in Response to Low Temperature.

Authors:  Cristiane P G Calixto; Craig G Simpson; Robbie Waugh; John W S Brown
Journal:  PLoS One       Date:  2016-12-13       Impact factor: 3.240

10.  TSIS: an R package to infer alternative splicing isoform switches for time-series data.

Authors:  Wenbin Guo; Cristiane P G Calixto; John W S Brown; Runxuan Zhang
Journal:  Bioinformatics       Date:  2017-10-15       Impact factor: 6.937

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