Literature DB >> 22890565

Micro-coil NMR to monitor optimization of the reconstitution conditions for the integral membrane protein OmpW in detergent micelles.

Pawel Stanczak1, Qinghai Zhang, Reto Horst, Pedro Serrano, Kurt Wüthrich.   

Abstract

Optimization of aqueous solutions of the integral membrane protein (IMP) OmpW for NMR structure determination has been monitored with micro-coil NMR, which enables the acquisition of NMR spectra using only micrograms of protein and detergent. The detergent 30-Fos (2-undecylphosphocholine) was found to yield the best 2D [(15)N, (1)H]-TROSY correlation NMR spectra of [(2)H, (15)N]-labeled OmpW. For the OmpW structure determination we then optimized the 30-Fos concentration, the sample temperature and long-time stability, and the deuteration level of the protein. Some emerging guidelines for reconstitution of β-barrel integral membrane proteins in structural biology are discussed.

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Year:  2012        PMID: 22890565      PMCID: PMC3715323          DOI: 10.1007/s10858-012-9658-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  High-resolution structure of the OmpA membrane domain.

Authors:  A Pautsch; G E Schulz
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

2.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

3.  The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.

Authors:  Heedeok Hong; Dimki R Patel; Lukas K Tamm; Bert van den Berg
Journal:  J Biol Chem       Date:  2006-01-12       Impact factor: 5.157

4.  Structure of the outer membrane protein A transmembrane domain.

Authors:  A Pautsch; G E Schulz
Journal:  Nat Struct Biol       Date:  1998-11

5.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

6.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

7.  Translational diffusion of macromolecular assemblies measured using transverse-relaxation-optimized pulsed field gradient NMR.

Authors:  Reto Horst; Arthur L Horwich; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2011-09-26       Impact factor: 15.419

Review 8.  The structural biology of β-barrel membrane proteins: a summary of recent reports.

Authors:  James W Fairman; Nicholas Noinaj; Susan K Buchanan
Journal:  Curr Opin Struct Biol       Date:  2011-06-28       Impact factor: 6.809

9.  Translational diffusion measurements by microcoil NMR in aqueous solutions of the Fos-10 detergent-solubilized membrane protein OmpX.

Authors:  Reto Horst; Pawel Stanczak; Pedro Serrano; Kurt Wüthrich
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

Review 10.  Solution NMR studies of the integral membrane proteins OmpX and OmpA from Escherichia coli.

Authors:  C Fernández; C Hilty; S Bonjour; K Adeishvili; K Pervushin; K Wüthrich
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

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  6 in total

1.  Influence of the lipid membrane environment on structure and activity of the outer membrane protein Ail from Yersinia pestis.

Authors:  Yi Ding; L Miya Fujimoto; Yong Yao; Gregory V Plano; Francesca M Marassi
Journal:  Biochim Biophys Acta       Date:  2014-11-27

2.  Extrinsic Tryptophans as NMR Probes of Allosteric Coupling in Membrane Proteins: Application to the A2A Adenosine Receptor.

Authors:  Matthew T Eddy; Zhan-Guo Gao; Philip Mannes; Nilkanth Patel; Kenneth A Jacobson; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2018-06-20       Impact factor: 15.419

3.  NMR polypeptide backbone conformation of the E. coli outer membrane protein W.

Authors:  Reto Horst; Pawel Stanczak; Kurt Wüthrich
Journal:  Structure       Date:  2014-07-10       Impact factor: 5.006

4.  Solution-NMR characterization of outer-membrane protein A from E. coli in lipid bilayer nanodiscs and detergent micelles.

Authors:  Lukas Sušac; Reto Horst; Kurt Wüthrich
Journal:  Chembiochem       Date:  2014-04-01       Impact factor: 3.164

5.  Transcriptional Regulation of the Outer Membrane Porin Gene ompW Reveals its Physiological Role during the Transition from the Aerobic to the Anaerobic Lifestyle of Escherichia coli.

Authors:  Minfeng Xiao; Yong Lai; Jian Sun; Guanhua Chen; Aixin Yan
Journal:  Front Microbiol       Date:  2016-05-31       Impact factor: 5.640

6.  Micro-scale NMR Experiments for Monitoring the Optimization of Membrane Protein Solutions for Structural Biology.

Authors:  Reto Horst; Kurt Wüthrich
Journal:  Bio Protoc       Date:  2015-07-20
  6 in total

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