Literature DB >> 16414958

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.

Heedeok Hong1, Dimki R Patel, Lukas K Tamm, Bert van den Berg.   

Abstract

Escherichia coli OmpW belongs to a family of small outer membrane proteins that are widespread in Gram-negative bacteria. Their functions are unknown, but recent data suggest that they may be involved in the protection of bacteria against various forms of environmental stress. To gain insight into the function of these proteins A we have determined the crystal structure of E. coli OmpW to 2.7-A resolution. The structure shows that OmpW forms an 8-stranded beta-barrel with a long and narrow hydrophobic channel that contains a bound n-dodecyl-N,N-dimethylamine-N-oxide detergent molecule. Single channel conductance experiments show that OmpW functions as an ion channel in planar lipid bilayers. The channel activity can be blocked by the addition of n-dodecyl-N,N-dimethylamine-N-oxide. Taken together, the data suggest that members of the OmpW family could be involved in the transport of small hydrophobic molecules across the bacterial outer membrane.

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Year:  2006        PMID: 16414958     DOI: 10.1074/jbc.M512365200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  76 in total

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-03-25

4.  Combinatorial model for sequence and spatial motif discovery in short sequence fragments: examples from beta-barrel membrane proteins.

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Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

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Journal:  J Biol Chem       Date:  2008-07-19       Impact factor: 5.157

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Journal:  Cell Microbiol       Date:  2013-12-13       Impact factor: 3.715

8.  TMBB-DB: a transmembrane β-barrel proteome database.

Authors:  Thomas C Freeman; William C Wimley
Journal:  Bioinformatics       Date:  2012-07-27       Impact factor: 6.937

9.  Transmembrane passage of hydrophobic compounds through a protein channel wall.

Authors:  Elizabeth M Hearn; Dimki R Patel; Bryan W Lepore; Mridhu Indic; Bert van den Berg
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

10.  OprG Harnesses the Dynamics of its Extracellular Loops to Transport Small Amino Acids across the Outer Membrane of Pseudomonas aeruginosa.

Authors:  Iga Kucharska; Patrick Seelheim; Thomas Edrington; Binyong Liang; Lukas K Tamm
Journal:  Structure       Date:  2015-11-19       Impact factor: 5.006

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