Literature DB >> 21919531

Translational diffusion of macromolecular assemblies measured using transverse-relaxation-optimized pulsed field gradient NMR.

Reto Horst1, Arthur L Horwich, Kurt Wüthrich.   

Abstract

In structural biology, pulsed field gradient (PFG) NMR spectroscopy for the characterization of size and hydrodynamic parameters of macromolecular solutes has the advantage over other techniques that the measurements can be recorded with identical solution conditions as used for NMR structure determination or for crystallization trials. This paper describes two transverse-relaxation-optimized (TRO) (15)N-filtered PFG stimulated-echo (STE) experiments for studies of macromolecular translational diffusion in solution, (1)H-TRO-STE and (15)N-TRO-STE, which include CRINEPT and TROSY elements. Measurements with mixed micelles of the Escherichia coli outer membrane protein X (OmpX) and the detergent Fos-10 were used for a systematic comparison of (1)H-TRO-STE and (15)N-TRO-STE with conventional (15)N-filtered STE experimental schemes. The results provide an extended platform for evaluating the NMR experiments available for diffusion measurements in structural biology projects involving molecular particles with different size ranges. An initial application of the (15)N-TRO-STE experiment with very long diffusion delays showed that the tedradecamer structure of the 800 kDa Thermus thermophilus chaperonin GroEL is preserved in aqueous solution over the temperature range 25-60 °C.

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Year:  2011        PMID: 21919531      PMCID: PMC3358227          DOI: 10.1021/ja206531c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Single or triple gradients?

Authors:  Riddhiman Sarkar; Detlef Moskau; Fabien Ferrage; Paul R Vasos; Geoffrey Bodenhausen
Journal:  J Magn Reson       Date:  2008-04-24       Impact factor: 2.229

3.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

4.  Measuring macromolecular diffusion using heteronuclear multiple-quantum pulsed-field-gradient NMR.

Authors:  A J Dingley; J P Mackay; G L Shaw; B D Hambly; G F King
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

5.  Hydrodynamics and protein hydration.

Authors:  P G Squire; M E Himmel
Journal:  Arch Biochem Biophys       Date:  1979-08       Impact factor: 4.013

6.  Solution NMR techniques for large molecular and supramolecular structures.

Authors:  Roland Riek; Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wuthrich
Journal:  J Am Chem Soc       Date:  2002-10-16       Impact factor: 15.419

7.  Slow diffusion of macromolecular assemblies by a new pulsed field gradient NMR method.

Authors:  Fabien Ferrage; Manuela Zoonens; Dror E Warschawski; Jean-Luc Popot; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

8.  Measuring protein self-association using pulsed-field-gradient NMR spectroscopy: application to myosin light chain 2.

Authors:  A J Dingley; J P Mackay; B E Chapman; M B Morris; P W Kuchel; B D Hambly; G F King
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  On choosing a detergent for solution NMR studies of membrane proteins.

Authors:  O Vinogradova; F Sönnichsen; C R Sanders
Journal:  J Biomol NMR       Date:  1998-05       Impact factor: 2.835

10.  Characterization of phospholipid mixed micelles by translational diffusion.

Authors:  James J Chou; James L Baber; Ad Bax
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

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  14 in total

1.  An enhanced sensitivity methyl 1H triple-quantum pulse scheme for measuring diffusion constants of macromolecules.

Authors:  Rui Huang; Jacob P Brady; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-07-17       Impact factor: 2.835

2.  High-Resolution Diffusion Measurements of Proteins by NMR under Near-Physiological Conditions.

Authors:  Jongchan Lee; Sho Hee Park; Silvia Cavagnero; Jung Ho Lee
Journal:  Anal Chem       Date:  2020-03-20       Impact factor: 6.986

3.  Measuring translational diffusion coefficients of peptides and proteins by PFG-NMR using band-selective RF pulses.

Authors:  Shenggen Yao; Daniel K Weber; Frances Separovic; David W Keizer
Journal:  Eur Biophys J       Date:  2014-05-14       Impact factor: 1.733

4.  Micro-coil NMR to monitor optimization of the reconstitution conditions for the integral membrane protein OmpW in detergent micelles.

Authors:  Pawel Stanczak; Qinghai Zhang; Reto Horst; Pedro Serrano; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2012-08-14       Impact factor: 2.835

5.  Measuring translational diffusion of 15N-enriched biomolecules in complex solutions with a simplified 1H-15N HMQC-filtered BEST sequence.

Authors:  Shenggen Yao; Thomas G Meikle; Ashish Sethi; Frances Separovic; Jeffrey J Babon; David W Keizer
Journal:  Eur Biophys J       Date:  2018-05-21       Impact factor: 1.733

6.  Translational diffusion measurements by microcoil NMR in aqueous solutions of the Fos-10 detergent-solubilized membrane protein OmpX.

Authors:  Reto Horst; Pawel Stanczak; Pedro Serrano; Kurt Wüthrich
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

7.  β2-Adrenergic receptor solutions for structural biology analyzed with microscale NMR diffusion measurements.

Authors:  Reto Horst; Pawel Stanczak; Raymond C Stevens; Kurt Wüthrich
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-24       Impact factor: 15.336

8.  Radiation damping in modern NMR experiments: progress and challenges.

Authors:  V V Krishnan; Nagarajan Murali
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2012-06-15       Impact factor: 9.795

9.  Protein structural changes characterized by high-pressure, pulsed field gradient diffusion NMR spectroscopy.

Authors:  Venkatraman Ramanujam; T Reid Alderson; Iva Pritišanac; Jinfa Ying; Ad Bax
Journal:  J Magn Reson       Date:  2020-02-19       Impact factor: 2.229

10.  Solution-NMR characterization of outer-membrane protein A from E. coli in lipid bilayer nanodiscs and detergent micelles.

Authors:  Lukas Sušac; Reto Horst; Kurt Wüthrich
Journal:  Chembiochem       Date:  2014-04-01       Impact factor: 3.164

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