Literature DB >> 23706817

Chromatin insulators: linking genome organization to cellular function.

Jennifer E Phillips-Cremins1, Victor G Corces.   

Abstract

A growing body of evidence suggests that insulators have a primary role in orchestrating the topological arrangement of higher-order chromatin architecture. Insulator-mediated long-range interactions can influence the epigenetic status of the genome and, in certain contexts, may have important effects on gene expression. Here we discuss higher-order chromatin organization as a unifying mechanism for diverse insulator actions across the genome.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23706817      PMCID: PMC3670141          DOI: 10.1016/j.molcel.2013.04.018

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  95 in total

Review 1.  Beyond the sequence: cellular organization of genome function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

2.  Analysis of the H19ICR insulator.

Authors:  Young Soo Yoon; Sangkyun Jeong; Qi Rong; Kye-Yoon Park; Jae Hoon Chung; Karl Pfeifer
Journal:  Mol Cell Biol       Date:  2007-03-05       Impact factor: 4.272

3.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

4.  Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators.

Authors:  William Stedman; Hyojeung Kang; Shu Lin; Joseph L Kissil; Marisa S Bartolomei; Paul M Lieberman
Journal:  EMBO J       Date:  2008-01-24       Impact factor: 11.598

5.  Cohesins functionally associate with CTCF on mammalian chromosome arms.

Authors:  Vania Parelho; Suzana Hadjur; Mikhail Spivakov; Marion Leleu; Stephan Sauer; Heather C Gregson; Adam Jarmuz; Claudia Canzonetta; Zoe Webster; Tatyana Nesterova; Bradley S Cobb; Kyoko Yokomori; Niall Dillon; Luis Aragon; Amanda G Fisher; Matthias Merkenschlager
Journal:  Cell       Date:  2008-01-31       Impact factor: 41.582

6.  Identification of long-range regulatory elements in the protocadherin-alpha gene cluster.

Authors:  Scott Ribich; Bosiljka Tasic; Tom Maniatis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

7.  Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.

Authors:  Tae Hoon Kim; Ziedulla K Abdullaev; Andrew D Smith; Keith A Ching; Dmitri I Loukinov; Roland D Green; Michael Q Zhang; Victor V Lobanenkov; Bing Ren
Journal:  Cell       Date:  2007-03-23       Impact factor: 41.582

8.  The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning.

Authors:  Man Mohan; Marek Bartkuhn; Martin Herold; Angela Philippen; Nina Heinl; Imke Bardenhagen; Joerg Leers; Robert A H White; Renate Renkawitz-Pohl; Harald Saumweber; Rainer Renkawitz
Journal:  EMBO J       Date:  2007-09-06       Impact factor: 11.598

9.  Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Authors:  Kerstin S Wendt; Keisuke Yoshida; Takehiko Itoh; Masashige Bando; Birgit Koch; Erika Schirghuber; Shuichi Tsutsumi; Genta Nagae; Ko Ishihara; Tsuyoshi Mishiro; Kazuhide Yahata; Fumio Imamoto; Hiroyuki Aburatani; Mitsuyoshi Nakao; Naoko Imamoto; Kazuhiro Maeshima; Katsuhiko Shirahige; Jan-Michael Peters
Journal:  Nature       Date:  2008-01-30       Impact factor: 49.962

10.  Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila.

Authors:  Tatiana I Gerasimova; Elissa P Lei; Ashley M Bushey; Victor G Corces
Journal:  Mol Cell       Date:  2007-12-14       Impact factor: 17.970

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  102 in total

1.  A variably occupied CTCF binding site in the ultrabithorax gene in the Drosophila bithorax complex.

Authors:  Jose Paolo Magbanua; Estelle Runneburger; Steven Russell; Robert White
Journal:  Mol Cell Biol       Date:  2014-11-03       Impact factor: 4.272

2.  CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation.

Authors:  Varun Narendra; Pedro P Rocha; Disi An; Ramya Raviram; Jane A Skok; Esteban O Mazzoni; Danny Reinberg
Journal:  Science       Date:  2015-02-27       Impact factor: 47.728

Review 3.  The DDX5/Dbp2 subfamily of DEAD-box RNA helicases.

Authors:  Zheng Xing; Wai Kit Ma; Elizabeth J Tran
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-02       Impact factor: 9.957

4.  Tissue-specific targeting of cell fate regulatory genes by E2f factors.

Authors:  L M Julian; Y Liu; C A Pakenham; D Dugal-Tessier; V Ruzhynsky; S Bae; S-Y Tsai; G Leone; R S Slack; A Blais
Journal:  Cell Death Differ       Date:  2015-04-24       Impact factor: 15.828

Review 5.  Architectural proteins, transcription, and the three-dimensional organization of the genome.

Authors:  Caelin Cubeñas-Potts; Victor G Corces
Journal:  FEBS Lett       Date:  2015-05-22       Impact factor: 4.124

6.  Bicoid-Dependent Activation of the Target Gene hunchback Requires a Two-Motif Sequence Code in a Specific Basal Promoter.

Authors:  Jia Ling; Kristaley Yui Umezawa; Theresa Scott; Stephen Small
Journal:  Mol Cell       Date:  2019-08-08       Impact factor: 17.970

Review 7.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

Review 8.  Organization and function of the 3D genome.

Authors:  Boyan Bonev; Giacomo Cavalli
Journal:  Nat Rev Genet       Date:  2016-10-14       Impact factor: 53.242

9.  multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.

Authors:  John C Stansfield; Kellen G Cresswell; Mikhail G Dozmorov
Journal:  Bioinformatics       Date:  2019-09-01       Impact factor: 6.937

10.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06
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