Literature DB >> 25012699

Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function.

Todd Schoborg1, Mariano Labrador.   

Abstract

Of the numerous classes of elements involved in modulating eukaryotic chromosome structure and function, chromatin insulators arguably remain the most poorly understood in their contribution to these processes in vivo. Indeed, our view of chromatin insulators has evolved dramatically since their chromatin boundary and enhancer blocking properties were elucidated roughly a quarter of a century ago as a result of recent genome-wide, high-throughput methods better suited to probing the role of these elements in their native genomic contexts. The overall theme that has emerged from these studies is that chromatin insulators function as general facilitators of higher-order chromatin loop structures that exert both physical and functional constraints on the genome. In this review, we summarize the result of recent work that supports this idea as well as a number of other studies linking these elements to a diverse array of nuclear processes, suggesting that chromatin insulators exert master control over genome organization and behavior.

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Year:  2014        PMID: 25012699     DOI: 10.1007/s00018-014-1672-6

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  190 in total

1.  The sea urchin sns insulator blocks CMV enhancer following integration in human cells.

Authors:  P Di Simone; A Di Leonardo; G Costanzo; R Melfi; G Spinelli
Journal:  Biochem Biophys Res Commun       Date:  2001-06-22       Impact factor: 3.575

2.  The CTCF insulator protein is posttranslationally modified by SUMO.

Authors:  Melissa J MacPherson; Linda G Beatty; Wenjing Zhou; Minjie Du; Paul D Sadowski
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

3.  A position-effect assay for boundaries of higher order chromosomal domains.

Authors:  R Kellum; P Schedl
Journal:  Cell       Date:  1991-03-08       Impact factor: 41.582

4.  Loss of insulator activity by paired Su(Hw) chromatin insulators.

Authors:  E Muravyova; A Golovnin; E Gracheva; A Parshikov; T Belenkaya; V Pirrotta; P Georgiev
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

5.  CTCF occupation of the herpes simplex virus 1 genome is disrupted at early times postreactivation in a transcription-dependent manner.

Authors:  Monica K Ertel; Amy L Cammarata; Rebecca J Hron; Donna M Neumann
Journal:  J Virol       Date:  2012-09-12       Impact factor: 5.103

6.  Oncogenic activity of Cdc6 through repression of the INK4/ARF locus.

Authors:  Susana Gonzalez; Peter Klatt; Sonia Delgado; Esther Conde; Fernando Lopez-Rios; Montserrat Sanchez-Cespedes; Juan Mendez; Francisco Antequera; Manuel Serrano
Journal:  Nature       Date:  2006-03-30       Impact factor: 49.962

7.  The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary.

Authors:  Alexey A Soshnev; Ryan M Baxley; J Robert Manak; Kai Tan; Pamela K Geyer
Journal:  Development       Date:  2013-07-24       Impact factor: 6.868

8.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

9.  Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains.

Authors:  Kevin Van Bortle; Edward Ramos; Naomi Takenaka; Jingping Yang; Jessica E Wahi; Victor G Corces
Journal:  Genome Res       Date:  2012-06-21       Impact factor: 9.043

10.  Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome.

Authors:  Nadezhda E Vorobyeva; Marina U Mazina; Anton K Golovnin; Daria V Kopytova; Dmitriy Y Gurskiy; Elena N Nabirochkina; Sofia G Georgieva; Pavel G Georgiev; Aleksey N Krasnov
Journal:  Nucleic Acids Res       Date:  2013-04-22       Impact factor: 16.971

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  10 in total

1.  The insulator protein Suppressor of Hairy wing is required for proper ring canal development during oogenesis in Drosophila.

Authors:  Shih-Jui Hsu; Maria P Plata; Ben Ernest; Saghi Asgarifar; Mariano Labrador
Journal:  Dev Biol       Date:  2015-04-14       Impact factor: 3.582

2.  Drosophila insulator proteins exhibit in vivo liquid-liquid phase separation properties.

Authors:  Bright Amankwaa; Todd Schoborg; Mariano Labrador
Journal:  Life Sci Alliance       Date:  2022-07-19

3.  Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans.

Authors:  Aaron C Daugherty; Robin W Yeo; Jason D Buenrostro; William J Greenleaf; Anshul Kundaje; Anne Brunet
Journal:  Genome Res       Date:  2017-11-15       Impact factor: 9.043

4.  Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex.

Authors:  Fabienne Cleard; Daniel Wolle; Andrew M Taverner; Tsutomu Aoki; Girish Deshpande; Peter Andolfatto; Francois Karch; Paul Schedl
Journal:  Genetics       Date:  2016-12-22       Impact factor: 4.562

5.  Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb.

Authors:  Irene Gutierrez-Perez; M Jordan Rowley; Xiaowen Lyu; Viviana Valadez-Graham; Diana M Vallejo; Esther Ballesta-Illan; Jose P Lopez-Atalaya; Isaac Kremsky; Esther Caparros; Victor G Corces; Maria Dominguez
Journal:  Cell Rep       Date:  2019-09-03       Impact factor: 9.423

Review 6.  Chromatin Structure and Function in Mosquitoes.

Authors:  Óscar M Lezcano; Miriam Sánchez-Polo; José L Ruiz; Elena Gómez-Díaz
Journal:  Front Genet       Date:  2020-12-07       Impact factor: 4.599

7.  Phosphorylated histone variant γH2Av is associated with chromatin insulators in Drosophila.

Authors:  James R Simmons; Ran An; Bright Amankwaa; Shannon Zayac; Justin Kemp; Mariano Labrador
Journal:  PLoS Genet       Date:  2022-10-05       Impact factor: 6.020

8.  Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster.

Authors:  Artem Bonchuk; Oksana Maksimenko; Olga Kyrchanova; Tatyana Ivlieva; Vladic Mogila; Girish Deshpande; Daniel Wolle; Paul Schedl; Pavel Georgiev
Journal:  BMC Biol       Date:  2015-08-07       Impact factor: 7.431

Review 9.  Human Artificial Chromosome with Regulated Centromere: A Tool for Genome and Cancer Studies.

Authors:  Natalay Kouprina; Nikolai Petrov; Oscar Molina; Mikhail Liskovykh; Elisa Pesenti; Jun-Ichirou Ohzeki; Hiroshi Masumoto; William C Earnshaw; Vladimir Larionov
Journal:  ACS Synth Biol       Date:  2018-08-16       Impact factor: 5.110

10.  N-terminal domain of the architectural protein CTCF has similar structural organization and ability to self-association in bilaterian organisms.

Authors:  Artem Bonchuk; Sofia Kamalyan; Sofia Mariasina; Konstantin Boyko; Vladimir Popov; Oksana Maksimenko; Pavel Georgiev
Journal:  Sci Rep       Date:  2020-02-14       Impact factor: 4.379

  10 in total

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