Literature DB >> 23298659

The role of chromatin insulators in nuclear architecture and genome function.

Kevin Van Bortle1, Victor G Corces.   

Abstract

Eukaryotic genomes are intricately arranged into highly organized yet dynamic structures that underlie patterns of gene expression and cellular identity. The recent adaptation of novel genomic strategies for assaying nuclear architecture has significantly extended and accelerated our ability to query the nature of genome organization and the players involved. In particular, recent explorations of physical arrangements and chromatin landscapes in higher eukaryotes have demonstrated that chromatin insulators, which mediate functional interactions between regulatory elements, appear to play an important role in these processes. Here we reflect on current findings and our rapidly expanding understanding of insulators and their role in nuclear architecture and genome function.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23298659      PMCID: PMC3632654          DOI: 10.1016/j.gde.2012.11.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  59 in total

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Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

2.  CTCF and cohesin help neurons raise their self-awareness.

Authors:  Job Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  Human tRNA genes function as chromatin insulators.

Authors:  Jesse R Raab; Jonathan Chiu; Jingchun Zhu; Sol Katzman; Sreenivasulu Kurukuti; Paul A Wade; David Haussler; Rohinton T Kamakaka
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

4.  Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression.

Authors:  Kevin Monahan; Noam D Rudnick; Polina D Kehayova; Florencia Pauli; Kimberly M Newberry; Richard M Myers; Tom Maniatis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-01       Impact factor: 11.205

5.  Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Authors:  Elphège P Nora; Bryan R Lajoie; Edda G Schulz; Luca Giorgetti; Ikuhiro Okamoto; Nicolas Servant; Tristan Piolot; Nynke L van Berkum; Johannes Meisig; John Sedat; Joost Gribnau; Emmanuel Barillot; Nils Blüthgen; Job Dekker; Edith Heard
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

Review 6.  A view of nuclear Polycomb bodies.

Authors:  Vincenzo Pirrotta; Hua-Bing Li
Journal:  Curr Opin Genet Dev       Date:  2011-12-16       Impact factor: 5.578

7.  Three-dimensional folding and functional organization principles of the Drosophila genome.

Authors:  Tom Sexton; Eitan Yaffe; Ephraim Kenigsberg; Frédéric Bantignies; Benjamin Leblanc; Michael Hoichman; Hugues Parrinello; Amos Tanay; Giacomo Cavalli
Journal:  Cell       Date:  2012-01-19       Impact factor: 41.582

8.  Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Authors:  Lucie Carrière; Sébastien Graziani; Olivier Alibert; Yad Ghavi-Helm; Fayçal Boussouar; Hélène Humbertclaude; Sylvie Jounier; Jean-Christophe Aude; Céline Keime; Janos Murvai; Mario Foglio; Marta Gut; Ivo Gut; Mark Lathrop; Julie Soutourina; Matthieu Gérard; Michel Werner
Journal:  Nucleic Acids Res       Date:  2011-09-12       Impact factor: 16.971

9.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

10.  A cell cycle role for the epigenetic factor CTCF-L/BORIS.

Authors:  Manuel Rosa-Garrido; Laura Ceballos; Pilar Alonso-Lecue; Cristina Abraira; M Dolores Delgado; Alberto Gandarillas
Journal:  PLoS One       Date:  2012-06-19       Impact factor: 3.240

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  34 in total

1.  Dynamic estrogen receptor interactomes control estrogen-responsive trefoil Factor (TFF) locus cell-specific activities.

Authors:  Justine Quintin; Christine Le Péron; Gaëlle Palierne; Maud Bizot; Stéphanie Cunha; Aurélien A Sérandour; Stéphane Avner; Catherine Henry; Frédéric Percevault; Marc-Antoine Belaud-Rotureau; Sébastien Huet; Erwan Watrin; Jérôme Eeckhoute; Vincent Legagneux; Gilles Salbert; Raphaël Métivier
Journal:  Mol Cell Biol       Date:  2014-04-21       Impact factor: 4.272

2.  Orphan CpG islands define a novel class of highly active enhancers.

Authors:  Joshua S K Bell; Paula M Vertino
Journal:  Epigenetics       Date:  2017-04-27       Impact factor: 4.528

3.  Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function.

Authors:  Sergi Cuartero; Ujué Fresán; Oscar Reina; Evarist Planet; M Lluisa Espinàs
Journal:  EMBO J       Date:  2014-02-06       Impact factor: 11.598

4.  An Organizational Hub of Developmentally Regulated Chromatin Loops in the Drosophila Antennapedia Complex.

Authors:  Mo Li; Zhibo Ma; Jiayang K Liu; Sharmila Roy; Sapna K Patel; Derrick C Lane; Haini N Cai
Journal:  Mol Cell Biol       Date:  2015-09-21       Impact factor: 4.272

5.  Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila.

Authors:  Chin-Tong Ong; Kevin Van Bortle; Edward Ramos; Victor G Corces
Journal:  Cell       Date:  2013-09-19       Impact factor: 41.582

6.  Evolutionarily Conserved Principles Predict 3D Chromatin Organization.

Authors:  M Jordan Rowley; Michael H Nichols; Xiaowen Lyu; Masami Ando-Kuri; I Sarahi M Rivera; Karen Hermetz; Ping Wang; Yijun Ruan; Victor G Corces
Journal:  Mol Cell       Date:  2017-08-17       Impact factor: 17.970

Review 7.  Regulatory activities of transposable elements: from conflicts to benefits.

Authors:  Edward B Chuong; Nels C Elde; Cédric Feschotte
Journal:  Nat Rev Genet       Date:  2016-11-21       Impact factor: 53.242

8.  Brahma regulates a specific trans-splicing event at the mod(mdg4) locus of Drosophila melanogaster.

Authors:  Simei Yu; Johan Waldholm; Stefanie Böhm; Neus Visa
Journal:  RNA Biol       Date:  2014-02-06       Impact factor: 4.652

Review 9.  Keeping it quiet: chromatin control of gammaherpesvirus latency.

Authors:  Paul M Lieberman
Journal:  Nat Rev Microbiol       Date:  2013-11-06       Impact factor: 60.633

10.  Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation.

Authors:  Raphaël Mourad; Olivier Cuvier
Journal:  PLoS Comput Biol       Date:  2016-05-20       Impact factor: 4.475

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