Literature DB >> 22888076

Molecular logic gates for DNA analysis: detection of rifampin resistance in M. tuberculosis DNA.

Evan M Cornett1, Eleanor A Campbell, George Gulenay, Evan Peterson, Neha Bhaskar, Dmitry M Kolpashchikov.   

Abstract

Elementary, Dr. Watson! A combination of YES and OR logic gates was applied to differentiate between DNA sequences of wild-type and rifampin-resistant (Rif(r)) Mycobacterium tuberculosis (Mtb) in a multiplex real-time fluorescent assay.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID： 22888076      PMCID： PMC3517149          DOI： 10.1002/anie.201203708

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


  43 in total

Review 1.  Strategies against multidrug-resistant tuberculosis.

Authors:  R Loddenkemper; D Sagebiel; A Brendel
Journal:  Eur Respir J Suppl       Date:  2002-07

2.  Early tuberculosis treatment monitoring by Xpert(R) MTB/RIF.

Authors:  Paolo Miotto; Sara Bigoni; Giovanni Battista Migliori; Alberto Matteelli; Daniela M Cirillo
Journal:  Eur Respir J       Date:  2012-05       Impact factor: 16.671

3.  Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.

Authors:  T R Gingeras; G Ghandour; E Wang; A Berno; P M Small; F Drobniewski; D Alland; E Desmond; M Holodniy; J Drenkow
Journal:  Genome Res       Date:  1998-05       Impact factor: 9.043

4.  Molecular beacons: probes that fluoresce upon hybridization.

Authors:  S Tyagi; F R Kramer
Journal:  Nat Biotechnol       Date:  1996-03       Impact factor: 54.908

5.  Evaluation of a line probe assay kit for characterization of rpoB mutations in rifampin-resistant Mycobacterium tuberculosis isolates from New York City.

Authors:  R C Cooksey; G P Morlock; S Glickman; J T Crawford
Journal:  J Clin Microbiol       Date:  1997-05       Impact factor: 5.948

6.  Molecular mechanisms of multiple drug resistance in clinical isolates of Mycobacterium tuberculosis.

Authors:  S Morris; G H Bai; P Suffys; L Portillo-Gomez; M Fairchok; D Rouse
Journal:  J Infect Dis       Date:  1995-04       Impact factor: 5.226

7.  Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis.

Authors:  A Telenti; P Imboden; F Marchesi; D Lowrie; S Cole; M J Colston; L Matter; K Schopfer; T Bodmer
Journal:  Lancet       Date:  1993-03-13       Impact factor: 79.321

8.  Performance of the Roche LightCycler real-time PCR assay for diagnosing extrapulmonary tuberculosis.

Authors:  N Gous; L E Scott; E Wong; T Omar; W D F Venter; W Stevens
Journal:  J Clin Microbiol       Date:  2012-04-11       Impact factor: 5.948

9.  DNA double-crossover molecules.

Authors:  T J Fu; N C Seeman
Journal:  Biochemistry       Date:  1993-04-06       Impact factor: 3.162

10.  Isolation of the gene for the beta subunit of RNA polymerase from rifampicin-resistant Mycobacterium tuberculosis and identification of new mutations.

Authors:  V Donnabella; F Martiniuk; D Kinney; M Bacerdo; S Bonk; B Hanna; W N Rom
Journal:  Am J Respir Cell Mol Biol       Date:  1994-12       Impact factor: 6.914
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  8 in total

1.  Alphanumerical Visual Display Made of DNA Logic Gates for Drug Susceptibility Testing of Pathogens.

Authors:  Ryan P Connelly; Evgeny S Morozkin; Yulia V Gerasimova
Journal:  Chembiochem       Date:  2018-01-04       Impact factor: 3.164

2.  Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Authors:  Shay Mailloux; Yulia V Gerasimova; Nataliia Guz; Dmitry M Kolpashchikov; Evgeny Katz
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-09       Impact factor: 15.336

3.  Divide and control: split design of multi-input DNA logic gates.

Authors:  Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2014-11-27       Impact factor: 6.222

4.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

5.  DNA Computing Systems Activated by Electrochemically-triggered DNA Release from a Polymer-brush-modified Electrode Array.

Authors:  Maria Gamella; Andrey Zakharchenko; Nataliia Guz; Madeline Masi; Sergiy Minko; Dmitry M Kolpashchikov; Heiko Iken; Arshak Poghossian; Michael J Schöning; Evgeny Katz
Journal:  Electroanalysis       Date:  2016-08-05       Impact factor: 3.223

Review 6.  Biosensors with built-in biomolecular logic gates for practical applications.

Authors:  Yu-Hsuan Lai; Sin-Cih Sun; Min-Chieh Chuang
Journal:  Biosensors (Basel)       Date:  2014-08-27

7.  Operating Cooperatively (OC) sensor for highly specific recognition of nucleic acids.

Authors:  Evan M Cornett; Martin R O'Steen; Dmitry M Kolpashchikov
Journal:  PLoS One       Date:  2013-02-18       Impact factor: 3.240

8.  Target-responsive DNA-capped nanocontainer used for fabricating universal detector and performing logic operations.

Authors:  Li Wu; Jinsong Ren; Xiaogang Qu
Journal:  Nucleic Acids Res       Date:  2014-09-23       Impact factor: 16.971
  8 in total

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