Literature DB >> 22871713

Channeling DNA for optical mapping.

Yael Michaeli, Yuval Ebenstein.   

Abstract

Mesh：

Year:  2012        PMID： 22871713     DOI： 10.1038/nbt.2324

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  Dynamic molecular combing: stretching the whole human genome for high-resolution studies.

Authors:  X Michalet; R Ekong; F Fougerousse; S Rousseaux; C Schurra; N Hornigold; M van Slegtenhorst; J Wolfe; S Povey; J S Beckmann; A Bensimon
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

Review 2.  Optical mapping: a novel, single-molecule approach to genomic analysis.

Authors:  A Samad; E F Huff; W Cai; D C Schwartz
Journal:  Genome Res       Date:  1995-08       Impact factor: 9.043

Review 3.  Labeling DNA for single-molecule experiments: methods of labeling internal specific sequences on double-stranded DNA.

Authors:  Hagar Zohar; Susan J Muller
Journal:  Nanoscale       Date:  2011-07-06       Impact factor: 7.790

4.  Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins.

Authors:  Soohong Kim; Anna Gottfried; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-16       Impact factor: 15.336

5.  Whole-genome molecular haplotyping of single cells.

Authors:  H Christina Fan; Jianbin Wang; Anastasia Potanina; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2010-12-19       Impact factor: 54.908

Review 6.  Repetitive DNA and next-generation sequencing: computational challenges and solutions.

Authors:  Todd J Treangen; Steven L Salzberg
Journal:  Nat Rev Genet       Date:  2011-11-29       Impact factor: 53.242

7.  Multicolor super-resolution DNA imaging for genetic analysis.

Authors:  Murat Baday; Aaron Cravens; Alex Hastie; Hyeongjun Kim; Deren E Kudeki; Pui-Yan Kwok; Ming Xiao; Paul R Selvin
Journal:  Nano Lett       Date:  2012-06-18       Impact factor: 11.189

8.  A map of human genome variation from population-scale sequencing.

Authors:  Gonçalo R Abecasis; David Altshuler; Adam Auton; Lisa D Brooks; Richard M Durbin; Richard A Gibbs; Matt E Hurles; Gil A McVean
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

9.  Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly.

Authors:  Ernest T Lam; Alex Hastie; Chin Lin; Dean Ehrlich; Somes K Das; Michael D Austin; Paru Deshpande; Han Cao; Niranjan Nagarajan; Ming Xiao; Pui-Yan Kwok
Journal:  Nat Biotechnol       Date:  2012-08       Impact factor: 54.908
  9 in total
  9 in total

1.  Electrophoretic stretching and imaging of single native chromatin fibers in nanoslits.

Authors:  Jia-Wei Yeh; Kylan Szeto
Journal:  Biomicrofluidics       Date:  2017-07-25       Impact factor: 2.800

2.  Distribution of label spacings for genome mapping in nanochannels.

Authors:  D Ödman; E Werner; K D Dorfman; C R Doering; B Mehlig
Journal:  Biomicrofluidics       Date:  2018-06-25       Impact factor: 2.800

3.  Simultaneous detection of multiple DNA damage types by multi-colour fluorescent labelling.

Authors:  Dmitry Torchinsky; Yael Michaeli; Natalie R Gassman; Yuval Ebenstein
Journal:  Chem Commun (Camb)       Date:  2019-09-19       Impact factor: 6.222

Review 4.  Thermoplastic nanofluidic devices for biomedical applications.

Authors:  Kumuditha M Weerakoon-Ratnayake; Colleen E O'Neil; Franklin I Uba; Steven A Soper
Journal:  Lab Chip       Date:  2017-01-31       Impact factor: 6.799

5.  Evaluation of Blob Theory for the Diffusion of DNA in Nanochannels.

Authors:  Damini Gupta; Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  Macromolecules       Date:  2018-02-20       Impact factor: 5.985

6.  Entropic trap purification of long DNA.

Authors:  Pranav Agrawal; Zsófia Bognár; Kevin D Dorfman
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

7.  Bacteriophage strain typing by rapid single molecule analysis.

Authors:  Assaf Grunwald; Moran Dahan; Anna Giesbertz; Adam Nilsson; Lena K Nyberg; Elmar Weinhold; Tobias Ambjörnsson; Fredrik Westerlund; Yuval Ebenstein
Journal:  Nucleic Acids Res       Date:  2015-05-27       Impact factor: 16.971

8.  One-Parameter Scaling Theory for DNA Extension in a Nanochannel.

Authors:  E Werner; G K Cheong; D Gupta; K D Dorfman; B Mehlig
Journal:  Phys Rev Lett       Date:  2017-12-28       Impact factor: 9.161

9.  Long-read single-molecule maps of the functional methylome.

Authors:  Hila Sharim; Assaf Grunwald; Tslil Gabrieli; Yael Michaeli; Sapir Margalit; Dmitry Torchinsky; Rani Arielly; Gil Nifker; Matyas Juhasz; Felix Gularek; Miguel Almalvez; Brandon Dufault; Sreetama Sen Chandra; Alexander Liu; Surajit Bhattacharya; Yi-Wen Chen; Eric Vilain; Kathryn R Wagner; Jonathan Pevsner; Jeff Reifenberger; Ernest T Lam; Alex R Hastie; Han Cao; Hayk Barseghyan; Elmar Weinhold; Yuval Ebenstein
Journal:  Genome Res       Date:  2019-03-07       Impact factor: 9.043
  9 in total

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