Literature DB >> 9278517

Dynamic molecular combing: stretching the whole human genome for high-resolution studies.

X Michalet1, R Ekong, F Fougerousse, S Rousseaux, C Schurra, N Hornigold, M van Slegtenhorst, J Wolfe, S Povey, J S Beckmann, A Bensimon.   

Abstract

DNA in amounts representative of hundreds of eukaryotic genomes was extended on silanized surfaces by dynamic molecular combing. The precise measurement of hybridized DNA probes was achieved directly without requiring normalization. This approach was validated with the high-resolution mapping of cosmid contigs on a yeast artificial chromosome (YAC) within yeast genomic DNA. It was extended to human genomic DNA for precise measurements ranging from 7 to 150 kilobases, of gaps within a contig, and of microdeletions in the tuberous sclerosis 2 gene on patients' DNA. The simplicity, reproducibility, and precision of this approach makes it a powerful tool for a variety of genomic studies.

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Year:  1997        PMID: 9278517     DOI: 10.1126/science.277.5331.1518

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  180 in total

Review 1.  Imaging of single DNA molecule: applications to high-resolution genomic studies.

Authors:  J Herrick; A Bensimon
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  Quantifying single gene copy number by measuring fluorescent probe lengths on combed genomic DNA.

Authors:  J Herrick; X Michalet; C Conti; C Schurra; A Bensimon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  Behavior of DNA fibers stretched by precise meniscus motion control.

Authors:  K Otobe; T Ohtani
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

4.  Molecular stretching of long DNA in agarose gel using alternating current electric fields.

Authors:  Noritada Kaji; Masanori Ueda; Yoshinobu Baba
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

5.  Distinct BRCA1 rearrangements involving the BRCA1 pseudogene suggest the existence of a recombination hot spot.

Authors:  Nadine Puget; Sophie Gad; Laure Perrin-Vidoz; Olga M Sinilnikova; Dominique Stoppa-Lyonnet; Gilbert M Lenoir; Sylvie Mazoyer
Journal:  Am J Hum Genet       Date:  2002-03-05       Impact factor: 11.025

6.  Observation by fluorescence microscopy of transcription on single combed DNA.

Authors:  Z Gueroui; C Place; E Freyssingeas; B Berge
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

7.  Shear-induced assembly of lambda-phage DNA.

Authors:  C Haber; D Wirtz
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

8.  Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments.

Authors:  Romain Koszul; Sandrine Caburet; Bernard Dujon; Gilles Fischer
Journal:  EMBO J       Date:  2003-12-18       Impact factor: 11.598

9.  ORC and the intra-S-phase checkpoint: a threshold regulates Rad53p activation in S phase.

Authors:  Kenji Shimada; Philippe Pasero; Susan M Gasser
Journal:  Genes Dev       Date:  2002-12-15       Impact factor: 11.361

10.  Toward single-molecule optical mapping of the epigenome.

Authors:  Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  ACS Nano       Date:  2013-12-20       Impact factor: 15.881

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