Literature DB >> 18487241

PhyloWidget: web-based visualizations for the tree of life.

Gregory E Jordan1, William H Piel.   

Abstract

UNLABELLED: PhyloWidget is a web-based tool for the visualization and manipulation of phylogenetic tree data. It can be accessed online or downloaded as a standalone application. A simple URL-based API allows databases to easily link to and customize PhyloWidget for interactively viewing medium- to large-sized trees. AVAILABILITY: PhyloWidget is available for online use or download at http://www.phylowidget.org/.

Mesh：

Year:  2008        PMID： 18487241     DOI： 10.1093/bioinformatics/btn235

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  64 in total

1.  Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Authors:  Jean-Francois Taly; Cedrik Magis; Giovanni Bussotti; Jia-Ming Chang; Paolo Di Tommaso; Ionas Erb; Jose Espinosa-Carrasco; Carsten Kemena; Cedric Notredame
Journal:  Nat Protoc       Date:  2011-11       Impact factor: 13.491

2.  A lead discovery strategy driven by a comprehensive analysis of proteases in the peptide substrate space.

Authors:  Sai Chetan K Sukuru; Florian Nigsch; Jean Quancard; Martin Renatus; Rajiv Chopra; Natasja Brooijmans; Dmitri Mikhailov; Zhan Deng; Allen Cornett; Jeremy L Jenkins; Ulrich Hommel; John W Davies; Meir Glick
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

3.  Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers.

Authors:  William Ziccardi; Chongjian Zhao; Valery Shepelev; Lev Uralsky; Ivan Alexandrov; Tatyana Andreeva; Evgeny Rogaev; Christopher Bun; Emily Miller; Catherine Putonti; Jeffrey Doering
Journal:  Chromosome Res       Date:  2016-07-18       Impact factor: 5.239

Review 4.  Visualization of multiple alignments, phylogenies and gene family evolution.

Authors:  James B Procter; Julie Thompson; Ivica Letunic; Chris Creevey; Fabrice Jossinet; Geoffrey J Barton
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

5.  OpenFluDB, a database for human and animal influenza virus.

Authors:  Robin Liechti; Anne Gleizes; Dmitry Kuznetsov; Lydie Bougueleret; Philippe Le Mercier; Amos Bairoch; Ioannis Xenarios
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

6.  Assigning strains to bacterial species via the internet.

Authors:  Cynthia J Bishop; David M Aanensen; Gregory E Jordan; Mogens Kilian; William P Hanage; Brian G Spratt
Journal:  BMC Biol       Date:  2009-01-26       Impact factor: 7.431

7.  PhyloExplorer: a web server to validate, explore and query phylogenetic trees.

Authors:  Vincent Ranwez; Nicolas Clairon; Frédéric Delsuc; Saeed Pourali; Nicolas Auberval; Sorel Diser; Vincent Berry
Journal:  BMC Evol Biol       Date:  2009-05-18       Impact factor: 3.260

8.  Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance.

Authors:  Stephen A McMahon; Gareth A Roberts; Kenneth A Johnson; Laurie P Cooper; Huanting Liu; John H White; Lester G Carter; Bansi Sanghvi; Muse Oke; Malcolm D Walkinshaw; Garry W Blakely; James H Naismith; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

9.  d-Omix: a mixer of generic protein domain analysis tools.

Authors:  Duangdao Wichadakul; Somrak Numnark; Supawadee Ingsriswang
Journal:  Nucleic Acids Res       Date:  2009-05-21       Impact factor: 16.971

10.  TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.

Authors:  Ben C Stöver; Kai F Müller
Journal:  BMC Bioinformatics       Date:  2010-01-05       Impact factor: 3.169
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.