Literature DB >> 32733134

The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification.

Kelly A Shepherd1, Brendan J Lepschi2, Eden A Johnson3, Andrew G Gardner4, Emily B Sessa5, Rachel S Jabaily6.   

Abstract

Close scrutiny of Goodenia (Goodeniaceae) and allied genera in the 'Core Goodeniaceae' over recent years has clarified our understanding of this captivating group. While expanded sampling, sequencing of multiple regions, and a genome skimming reinforced backbone clearly supported Goodenia s.l. as monophyletic and distinct from Scaevola and Coopernookia, there appears to be no synapomorphic characters that uniquely characterise this morphologically diverse clade. Within Goodenia s.l., there is strong support from nuclear, chloroplast and mitochondrial data for three major clades (Goodenia Clades A, B and C) and various subclades, which lead to earlier suggestions for the possible recognition of these as distinct genera. Through ongoing work, it has become evident that this is impractical, as conflict remains within the most recently diverged Clade C, likely due to recent radiation and incomplete lineage sorting. In light of this, it is proposed that a combination of morphological characters is used to circumscribe an expanded Goodenia that now includes Velleia, Verreauxia, Selliera and Pentaptilon, and an updated infrageneric classification is proposed to accommodate monophyletic subclades. A total of twenty-five new combinations, three reinstatements, and seven new names are published herein including Goodenia subg. Monochila sect. Monochila subsect. Infracta K.A.Sheph. subsect. nov. Also, a type is designated for Goodenia subg. Porphyranthus sect. Ebracteolatae (K.Krause) K.A.Sheph. comb. et stat. nov., and lectotypes or secondstep lectotypes are designated for a further three names. Kelly A. Shepherd, Brendan J. Lepschi, Eden A. Johnson, Andrew G. Gardner, Emily B. Sessa, Rachel S. Jabaily.

Entities:  

Keywords:  Goodenia ; Goodeniaceae ; Velleia ; nomenclature; phylogeny; taxonomy

Year:  2020        PMID: 32733134      PMCID: PMC7360637          DOI: 10.3897/phytokeys.152.49604

Source DB:  PubMed          Journal:  PhytoKeys        ISSN: 1314-2003            Impact factor:   1.635


  10 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  Genealogical evidence of homoploid hybrid speciation in an adaptive radiation of Scaevola (goodeniaceae) in the Hawaiian Islands.

Authors:  Dianella G Howarth; David A Baum
Journal:  Evolution       Date:  2005-05       Impact factor: 3.694

3.  Phylogenetics of the genus Scaevola (Goodeniaceae): implication for dispersal patterns across the Pacific Basin and colonization of the Hawaiian Islands.

Authors:  Dianella G Howarth; Mats H G Gustafsson; David A Baum; Timothy J Motley
Journal:  Am J Bot       Date:  2003-06       Impact factor: 3.844

4.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

5.  Utilizing next-generation sequencing to resolve the backbone of the Core Goodeniaceae and inform future taxonomic and floral form studies.

Authors:  Andrew G Gardner; Emily B Sessa; Pryce Michener; Eden Johnson; Kelly A Shepherd; Dianella G Howarth; Rachel S Jabaily
Journal:  Mol Phylogenet Evol       Date:  2015-10-20       Impact factor: 4.286

6.  Employing hypothesis testing and data from multiple genomic compartments to resolve recalcitrant backbone nodes in Goodenia s.l. (Goodeniaceae).

Authors:  Rachel S Jabaily; Kelly A Shepherd; Pryce S Michener; Caroline J Bush; Rodrigo Rivero; Andrew G Gardner; Emily B Sessa
Journal:  Mol Phylogenet Evol       Date:  2018-10       Impact factor: 4.286

7.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

8.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

9.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

10.  Characterizing Floral Symmetry in the Core Goodeniaceae with Geometric Morphometrics.

Authors:  Andrew G Gardner; Jonathan N Fitz Gerald; John Menz; Kelly A Shepherd; Dianella G Howarth; Rachel S Jabaily
Journal:  PLoS One       Date:  2016-05-05       Impact factor: 3.240

  10 in total

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